View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11645_low_31 (Length: 316)

Name: NF11645_low_31
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11645_low_31
NF11645_low_31
[»] chr7 (8 HSPs)
chr7 (8-146)||(36641203-36641341)
chr7 (143-245)||(36641371-36641473)
chr7 (151-191)||(10893877-10893917)
chr7 (150-189)||(18750886-18750925)
chr7 (151-192)||(650530-650571)
chr7 (151-192)||(43160495-43160536)
chr7 (150-190)||(23249459-23249499)
chr7 (151-191)||(31837762-31837802)
[»] chr1 (1 HSPs)
chr1 (150-192)||(26462652-26462694)
[»] chr8 (5 HSPs)
chr8 (151-192)||(32691754-32691795)
chr8 (150-192)||(29096956-29096998)
chr8 (151-192)||(31681837-31681878)
chr8 (147-191)||(14732891-14732935)
chr8 (147-187)||(43806208-43806248)
[»] chr5 (2 HSPs)
chr5 (146-191)||(28322247-28322292)
chr5 (151-188)||(645343-645380)
[»] chr3 (2 HSPs)
chr3 (150-195)||(1502584-1502629)
chr3 (154-195)||(4946208-4946249)
[»] chr2 (3 HSPs)
chr2 (147-195)||(8765405-8765453)
chr2 (150-190)||(35198240-35198280)
chr2 (158-191)||(22305566-22305599)
[»] chr6 (1 HSPs)
chr6 (147-192)||(32577471-32577516)
[»] chr4 (4 HSPs)
chr4 (150-191)||(20119955-20119996)
chr4 (151-192)||(45615422-45615463)
chr4 (159-192)||(51383995-51384028)
chr4 (152-192)||(683064-683104)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 6e-68; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 8 - 146
Target Start/End: Original strand, 36641203 - 36641341
Alignment:
Q  8 acacacacacagttataaaataaaaagaacataaacaaaacgctgaaatatactagtatatgaagtcatttgacacagttctgggtcaattaggatcatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36641203 acacacacacagttataaaataaaaagaacataaacaaaacgcagaaatatactagtatatgaagtcatttgacacagttctgggtcaattaggatcatt 36641302  T
Q  108 ctaaagtaagtaaattcctatgatgaaccaaacatacaa 146  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  36641303 ctaaagtaagtaaattcctataatgaaccaaacatacaa 36641341  T

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Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 143 - 245
Target Start/End: Original strand, 36641371 - 36641473
Alignment:
Q  143 acaagtgataatttaagaaaatgaaataatcgaatgtaatcacatgtgtctgtctcgaaaacttaacacaccgtcatagcgataccactcattatatttg 242  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36641371 acaagtgataatttaagaaaatgaaataatcgaatgtaaccacgtgtgtctgtctcgaaaacttaacacaccgtcatagcgataccactcattatatttg 36641470  T
Q  243 tga 245  Q
    |||    
T  36641471 tga 36641473  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 10893917 - 10893877
Alignment:
Q  151 taatttaagaaaatgaaataatcgaatgtaatcacatgtgt 191  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  10893917 taatttaagaaaatgacataattgaatgtaatcacatgtgt 10893877  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 189
Target Start/End: Original strand, 18750886 - 18750925
Alignment:
Q  150 ataatttaagaaaatgaaataatcgaatgtaatcacatgt 189  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  18750886 ataatttaagaaaatgacataattgaatgtaatcacatgt 18750925  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 650530 - 650571
Alignment:
Q  151 taatttaagaaaatgaaataatcgaatgtaatcacatgtgtc 192  Q
    |||||||||||||||| ||||| ||||| |||||||||||||    
T  650530 taatttaagaaaatgacataattgaatgcaatcacatgtgtc 650571  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 43160495 - 43160536
Alignment:
Q  151 taatttaagaaaatgaaataatcgaatgtaatcacatgtgtc 192  Q
    |||||||||||||| | ||||| |||||||||||||||||||    
T  43160495 taatttaagaaaataacataattgaatgtaatcacatgtgtc 43160536  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 23249499 - 23249459
Alignment:
Q  150 ataatttaagaaaatgaaataatcgaatgtaatcacatgtg 190  Q
    ||||||||||||||||||||||| | ||||||||| |||||    
T  23249499 ataatttaagaaaatgaaataattgtatgtaatcagatgtg 23249459  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 31837762 - 31837802
Alignment:
Q  151 taatttaagaaaatgaaataatcgaatgtaatcacatgtgt 191  Q
    |||||| ||||||||||||||| |||||||||| |||||||    
T  31837762 taatttgagaaaatgaaataattgaatgtaatctcatgtgt 31837802  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 26462694 - 26462652
Alignment:
Q  150 ataatttaagaaaatgaaataatcgaatgtaatcacatgtgtc 192  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  26462694 ataatttaagaaaatgaaataattgaatgtaatcacatgtgtc 26462652  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 32691754 - 32691795
Alignment:
Q  151 taatttaagaaaatgaaataatcgaatgtaatcacatgtgtc 192  Q
    |||||||||||||||| ||||| |||||||||||||||||||    
T  32691754 taatttaagaaaatgacataattgaatgtaatcacatgtgtc 32691795  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 29096956 - 29096998
Alignment:
Q  150 ataatttaagaaaatgaaataatcgaatgtaatcacatgtgtc 192  Q
    ||||||||||||||| || |||| |||||||||||||||||||    
T  29096956 ataatttaagaaaataaattaattgaatgtaatcacatgtgtc 29096998  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 31681878 - 31681837
Alignment:
Q  151 taatttaagaaaatgaaataatcgaatgtaatcacatgtgtc 192  Q
    |||||||||||||||| ||||| ||||| |||||||||||||    
T  31681878 taatttaagaaaatgacataattgaatgaaatcacatgtgtc 31681837  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 14732891 - 14732935
Alignment:
Q  147 gtgataatttaagaaaatgaaataatcgaatgtaatcacatgtgt 191  Q
    ||||||||||||||||||||| ||||  |||||||| ||||||||    
T  14732891 gtgataatttaagaaaatgaattaattaaatgtaataacatgtgt 14732935  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 43806248 - 43806208
Alignment:
Q  147 gtgataatttaagaaaatgaaataatcgaatgtaatcacat 187  Q
    ||||||||||||||||||||| |||| |||| |||||||||    
T  43806248 gtgataatttaagaaaatgaattaattgaatataatcacat 43806208  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 28322247 - 28322292
Alignment:
Q  146 agtgataatttaagaaaatgaaataatcgaatgtaatcacatgtgt 191  Q
    ||||||||||| |||||||||| |||| ||||||||||||||||||    
T  28322247 agtgataatttgagaaaatgaattaattgaatgtaatcacatgtgt 28322292  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 645343 - 645380
Alignment:
Q  151 taatttaagaaaatgaaataatcgaatgtaatcacatg 188  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  645343 taatttaagaaaatgacataattgaatgtaatcacatg 645380  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 1502584 - 1502629
Alignment:
Q  150 ataatttaagaaaatgaaataatcgaatgtaatcacatgtgtctgt 195  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||||    
T  1502584 ataatctaagaaaatgacataattgaatgtaatcacatgtgtctgt 1502629  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 4946249 - 4946208
Alignment:
Q  154 tttaagaaaatgaaataatcgaatgtaatcacatgtgtctgt 195  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  4946249 tttaagaaaatgatataattgaatgtaatcacatgtgtctgt 4946208  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 8765453 - 8765405
Alignment:
Q  147 gtgataatttaagaaaatgaaataatcgaatgtaatcacatgtgtctgt 195  Q
    ||||||||||||||||| ||| |||| |||||||| |||||||||||||    
T  8765453 gtgataatttaagaaaacgaattaattgaatgtaagcacatgtgtctgt 8765405  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 35198280 - 35198240
Alignment:
Q  150 ataatttaagaaaatgaaataatcgaatgtaatcacatgtg 190  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  35198280 ataatttaagaaaatgaattaattgaatgtaatcacatgtg 35198240  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 22305566 - 22305599
Alignment:
Q  158 agaaaatgaaataatcgaatgtaatcacatgtgt 191  Q
    ||||||||||||||| ||||||||||||||||||    
T  22305566 agaaaatgaaataattgaatgtaatcacatgtgt 22305599  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 32577516 - 32577471
Alignment:
Q  147 gtgataatttaagaaaatgaaataatcgaatgtaatcacatgtgtc 192  Q
    ||||| |||| |||||||||| |||| |||||||||||||||||||    
T  32577516 gtgatgatttgagaaaatgaattaattgaatgtaatcacatgtgtc 32577471  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 20119955 - 20119996
Alignment:
Q  150 ataatttaagaaaatgaaataatcgaatgtaatcacatgtgt 191  Q
    ||||||| |||||||||||||||  |||||||||||||||||    
T  20119955 ataatttgagaaaatgaaataatttaatgtaatcacatgtgt 20119996  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 45615463 - 45615422
Alignment:
Q  151 taatttaagaaaatgaaataatcgaatgtaatcacatgtgtc 192  Q
    |||||||||||||||| ||||| ||| |||||||||||||||    
T  45615463 taatttaagaaaatgacataattgaacgtaatcacatgtgtc 45615422  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 51384028 - 51383995
Alignment:
Q  159 gaaaatgaaataatcgaatgtaatcacatgtgtc 192  Q
    |||||||||||||| |||||||||||||||||||    
T  51384028 gaaaatgaaataattgaatgtaatcacatgtgtc 51383995  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 683064 - 683104
Alignment:
Q  152 aatttaagaaaatgaaataatcgaatgtaatcacatgtgtc 192  Q
    ||||| ||||||||| ||||| |||||||||||||||||||    
T  683064 aatttgagaaaatgacataattgaatgtaatcacatgtgtc 683104  T

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