View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_low_32 (Length: 315)
Name: NF11645_low_32
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_low_32 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 175 - 315
Target Start/End: Complemental strand, 40771585 - 40771445
Alignment:
| Q |
175 |
ttttgtgtttggtttggtgaaaatgatgctaaaaatcaaaagggttcccaccgttgtttccaattatcaaaaagaggaggttggagaggctgctcctcgt |
274 |
Q |
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| T |
40771585 |
ttttgtgtttggtttggtgaaaatgatgctaaaaatcaaaagggttcccaccgttgtttccaattatcaaaaagaggaggttggagaggctgctcctcgt |
40771486 |
T |
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| Q |
275 |
actgtcggaggttgtggtcggaattgtctcaaatcttgttg |
315 |
Q |
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| T |
40771485 |
actgtcggaggttgtggtcggaattgtctcaaatcttgttg |
40771445 |
T |
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Target: chr5; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 40771768 - 40771625
Alignment:
| Q |
1 |
cttcctcgccggtggtggtgtctttgctccttcttccttctaatttcttatttttagtttaactttctgttagatttttacgactcaaaactataagcta |
100 |
Q |
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| T |
40771768 |
cttcctcgccggtggtggtgtctttgctccttcttccttctaatttcttgtttttagtttaactttct-ttagatttttacgactcaaaactataagcta |
40771670 |
T |
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| Q |
101 |
aaactagactttgtaagtaagatttatttgaaggtgcttcttctt |
145 |
Q |
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| T |
40771669 |
aaactagactttgtaagtaagatttatttgaaggtgcttcttctt |
40771625 |
T |
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