View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_low_38 (Length: 292)
Name: NF11645_low_38
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 42198357 - 42198636
Alignment:
| Q |
1 |
cagtgagattgtttgatga-tagatccaaagtcacaagtgatgctaaatcccctagactatttggaatcgagccactaaatttgtttctagccatcacaa |
99 |
Q |
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| T |
42198357 |
cagtgagattgtttgatgaatagatccaaagtcacaagtgatgctaaatcccctagactatttggaattgagccactaaatttgtttctagccatcacaa |
42198456 |
T |
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| Q |
100 |
gtattttcaatccgctta----cttctaatttaggaatgttccctgacaaccaaatgttcgaaataaccatggtctctagatgctccatttttaactcag |
195 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42198457 |
gtattttcaatccgcttaattacttctaatttaggaatgttccctgacaaccagttgttcgaaataaccatggtctctagatgctccatttttaactcag |
42198556 |
T |
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| Q |
196 |
gaggaatcgaaccattcaaagagtttccttgcaagttcaaggttgtcaagtcattgaattgaaaaatctccattggtatg |
275 |
Q |
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| T |
42198557 |
gaggaatcgaacctttcaaagagtttccttgcaagttcaaggttgtcaagtcattgaattgaaaaatctccattggtatg |
42198636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 42210933 - 42211207
Alignment:
| Q |
1 |
cagtgagattgtttgatgatagatccaaagtcacaagtgatgctaaatcccctagactatttggaatcgagccactaaatttgtttctagccatcacaag |
100 |
Q |
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|||||||| |||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||| ||| |
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| T |
42210933 |
cagtgagactgtttgatgatagatctaaagtcacaagggatggcaaatcccctagactatttggaattgagccactaaaattgtttcttgccatcataag |
42211032 |
T |
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| Q |
101 |
tattttcaatccgcttacttctaatttaggaatgttccctgacaaccaaatgttcgaaataaccatggtctctagatgctccatttttaactcaggagga |
200 |
Q |
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| T |
42211033 |
tgttttcaatccgttaacttcgattttaggaatgttccctgacagcttgttgtccgaaacaaccatggcctctagctgctccattttgaattgaggagga |
42211132 |
T |
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| Q |
201 |
atcgaaccattcaaagagtttccttgcaagttcaaggttgtcaagtcattgaattgaaaaatctccattggtatg |
275 |
Q |
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| |||||| |||| ||| ||||| || |||| || ||||||||| || || ||||||||||||||| |||||| |
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| T |
42211133 |
agcgaaccgttcagagaatttccatgtaagtataaagttgtcaagccagagagttgaaaaatctccatgggtatg |
42211207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 42223149 - 42223423
Alignment:
| Q |
1 |
cagtgagattgtttgatgatagatccaaagtcacaagtgatgctaaatcccctagactatttggaatcgagccactaaatttgtttctagccatcacaag |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||| || |
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| T |
42223149 |
cagtgagattgtttgatgatagatctaaagtcacaagggatgctaaatcacctagactatttggaattgagccactaaaattgtttcttgccatcactag |
42223248 |
T |
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| Q |
101 |
tattttcaatccgcttacttctaatttaggaatgttccctgacaaccaaatgttcgaaataaccatggtctctagatgctccatttttaactcaggagga |
200 |
Q |
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| T |
42223249 |
tgttttcaatccgtcaacttcgattttaggaatgttccctgacagcatgttgtctgaaacaaccatggccactagctgctccatcttgaacgaaggagga |
42223348 |
T |
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| Q |
201 |
atcgaaccattcaaagagtttccttgcaagttcaaggttgtcaagtcattgaattgaaaaatctccattggtatg |
275 |
Q |
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| ||||||||||| ||| ||||| || |||| || ||||||||| | || |||||||||||||||||||||| |
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| T |
42223349 |
agcgaaccattcagagaatttccatgtaagtataaagttgtcaagctagagagttgaaaaatctccattggtatg |
42223423 |
T |
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