View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_low_4 (Length: 577)
Name: NF11645_low_4
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 7 - 567
Target Start/End: Complemental strand, 155653 - 155092
Alignment:
| Q |
7 |
taagagtattt-acttactcctggtttcttaggcacaactagcaaatgcctgagtccaagctcccgaaacagaagagcagcttttgcaagagacattgtt |
105 |
Q |
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| T |
155653 |
taagagtattttacttactcctggtttcttaggcacaactagcaaatgcctgagtccaagctcccgaaacagaagagcagcttttgcaagagacattgtt |
155554 |
T |
|
| Q |
106 |
tcaacaacagtatatggagaagtatttgtgattggatgaagatcaacatacatttccatctcctcttgtgaaatgtccaaatcctccacccttatccctc |
205 |
Q |
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| T |
155553 |
tcaacaacagtatatggagaagtatttgtgattggatgaagatcaacatacatttccatctcctcttgtgaaatgtccaaatcctccacccttatccctc |
155454 |
T |
|
| Q |
206 |
ttcccaaacctggttttgcaaaatcccttgccttaaccttgttcactatagtagaccctgtcatcaccctctccctagtgaacaatgtcttgtgcttgag |
305 |
Q |
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| T |
155453 |
ttcccaaacctggttttgcaaaatcccttgccttaaccttgttcacaatagtagaccctgtcatcaccctctccctagtgaacaatgtcttgtgcttgag |
155354 |
T |
|
| Q |
306 |
aagcaccaaaagatgagacctcaacaccaacccacacaactccggagcatccgtcaaaggaggctcatcaactactggaaatccgtgatgttctgtcact |
405 |
Q |
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| T |
155353 |
aagcacccaaagatgagacctcaacaccaacccacacaactcgggagcatccgtcaaaggaggctcatcaactactggaaatccgtgatgttctgtcact |
155254 |
T |
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| Q |
406 |
ttcaaagcgtgcaatatattccccactttttcgatcccacaaaaagaaaacagtggaccagaaacaacatcccctgcaactaaattcctcatgtatggct |
505 |
Q |
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| T |
155253 |
ttcaaagcgtgcaatatattccccactttttcgatcccacaaaaagaaaacagtggaccagaaacaacatcccctgcaactaaattcctcatgtatggct |
155154 |
T |
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| Q |
506 |
ctgcatgtgcttccatataaggtagtcccttcaacgccacaatctgatcataaacacctttg |
567 |
Q |
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| T |
155153 |
ctgcatgtgcttccatataaggtagtcccttcaacgccacaatctgatcataaacacctttg |
155092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 318 - 567
Target Start/End: Original strand, 56469213 - 56469462
Alignment:
| Q |
318 |
atgagacctcaacaccaacccacacaactccggagcatccgtcaaaggaggctcatcaactactggaaatccgtgatgttctgtcactttcaaagcgtgc |
417 |
Q |
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| T |
56469213 |
atgagacctcaaaaccaacccacataactctggagcttctaagaatggaggctcatcaatcacaggaaacccattatgtcgcgtcacctttaaagtgtgc |
56469312 |
T |
|
| Q |
418 |
aatatattccccactttttcgatcccacaaaaagaaaacagtggaccagaaacaacatcccctgcaactaaattcctcatgtatggctctgcatgtgctt |
517 |
Q |
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| T |
56469313 |
acaatattccccactttttcaataccagagaatgtaaacagtggaccagaaacaacatcaccggcaactaaatgcctcatgtacggttctgcatgcactt |
56469412 |
T |
|
| Q |
518 |
ccatataaggtagtcccttcaacgccacaatctgatcataaacacctttg |
567 |
Q |
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| T |
56469413 |
ccaaataaggcaaccccttcatttccactatttgatcataaacacctttg |
56469462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 56468920 - 56469020
Alignment:
| Q |
19 |
cttactcctggtttcttaggcacaactagcaaatgcctgagtccaagctcccgaaacagaagagcagcttttgcaagagacattgtttcaacaacagtat |
118 |
Q |
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| T |
56468920 |
cttactccggatgtctttggcaccaccaacaaatgcctgaggccaagctcacggaaaagaactgcagttttagctagagacattgtttccacaactgtat |
56469019 |
T |
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| Q |
119 |
a |
119 |
Q |
| |
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| T |
56469020 |
a |
56469020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 163
Target Start/End: Original strand, 24328780 - 24328867
Alignment:
| Q |
76 |
agaagagcagcttttgcaagagacattgtttcaacaacagtatatggagaagtatttgtgattggatgaagatcaacatacatttcca |
163 |
Q |
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| T |
24328780 |
agaatagcggctttagcaagtgacatagtctcaactacagtgtacggcgatgtattagttattggatgaagatcaacatacatatcca |
24328867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 533
Target Start/End: Original strand, 24329119 - 24329234
Alignment:
| Q |
418 |
aatatattccccactttttcgatcccacaaaaagaaaacagtggaccagaaacaacatcccctgcaactaaattcctcatgtatggctctgcatgtgctt |
517 |
Q |
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||||||||||| || |||||||| ||| |||| | | || |||||| || |||||||| | || | ||| |||||||||||| || || |||||||||| |
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| T |
24329119 |
aatatattcccaaccttttcgatgccagaaaaggtcatcaatggacccgagacaacatcacgtgtagctatattcctcatgtaaggttcggcatgtgctt |
24329218 |
T |
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| Q |
518 |
ccatataaggtagtcc |
533 |
Q |
| |
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||| |||||| ||||| |
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| T |
24329219 |
ccaaataaggaagtcc |
24329234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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