View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11645_low_42 (Length: 269)
Name: NF11645_low_42
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_low_42 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 269
Target Start/End: Original strand, 8699671 - 8699940
Alignment:
| Q |
5 |
ttatggtcagtggcaatttagattcttatgtatattttgatgctaatgaccaagtacctt-----gatgtaatgacaatgttggaatgaatcattacttt |
99 |
Q |
| |
|
|||||||||||| |||||||| | |||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8699671 |
ttatggtcagtgacaatttaggtccttaagtatattttgatgttaatgaccaagtaccttattttgatgtaatgacaatgttggaatgaatcattacttt |
8699770 |
T |
|
| Q |
100 |
atgaaatcatctatgtgcatatcattagggattcaatcattatagtcatacttgatttggtataatcttcattttggtcgaatttaaggaccataccatt |
199 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8699771 |
atgaaattatctatgtgcatatcattagggattcaatcattatagtcatacttgacttggtataatcttcattttggtcgaatttaaggaccataccatt |
8699870 |
T |
|
| Q |
200 |
tcaaattacagagacattcattcaagactaggcataattgaaaattgattcaaaatacagagacattcat |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8699871 |
tcaaattacagagacattcattcaagactaggcataattgaaaattgattcaaaatacagagacattcat |
8699940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 8699603 - 8699663
Alignment:
| Q |
1 |
ttgtttatggtcagtggcaatttagattcttatgtatattttgatgctaatgaccaagtac |
61 |
Q |
| |
|
|||||||||||||||| |||||||| | |||| ||||||||||||||||||||||| |||| |
|
|
| T |
8699603 |
ttgtttatggtcagtgacaatttaggtccttaagtatattttgatgctaatgaccaggtac |
8699663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 269
Target Start/End: Original strand, 20598382 - 20598651
Alignment:
| Q |
5 |
ttatggtcagtggcaatttagattcttatgtatattttgatgctaatgaccaagtacctt-----gatgtaatgacaatgttggaatgaatcattacttt |
99 |
Q |
| |
|
|||| ||||||| |||||| | | |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20598382 |
ttattgtcagtgacaattttggtccttaagtatattttgatgctaatgaccaagtaccttattttgatgtaatgacaatgttggaatgaatcattacttt |
20598481 |
T |
|
| Q |
100 |
atgaaatcatctatgtgcatatcattagggattcaatcattatagtcatacttgatttggtataatcttcattttggtcgaatttaaggaccataccatt |
199 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20598482 |
atgaaattatctatgtgcatatcattagggattcaatcattatagtcatacttgatttggtataatcttcattttggtcgaatttatggaccataccatt |
20598581 |
T |
|
| Q |
200 |
tcaaattacagagacattcattcaagactaggcataattgaaaattgattcaaaatacagagacattcat |
269 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20598582 |
tcaaattacacagacattcattcaagactaggcataattgaaaattgattcaaaatacagagacattcat |
20598651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 20598314 - 20598374
Alignment:
| Q |
1 |
ttgtttatggtcagtggcaatttagattcttatgtatattttgatgctaatgaccaagtac |
61 |
Q |
| |
|
|||||||||||||||| |||||||| | |||| |||||||||||||||||||||||||||| |
|
|
| T |
20598314 |
ttgtttatggtcagtgacaatttaggtccttaagtatattttgatgctaatgaccaagtac |
20598374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University