View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11645_low_43 (Length: 268)

Name: NF11645_low_43
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11645_low_43
NF11645_low_43
[»] chr7 (2 HSPs)
chr7 (83-233)||(40404095-40404245)
chr7 (137-185)||(43353790-43353838)
[»] chr8 (6 HSPs)
chr8 (79-232)||(24963048-24963201)
chr8 (84-233)||(38112484-38112633)
chr8 (85-233)||(8750017-8750165)
chr8 (83-206)||(41648542-41648663)
chr8 (20-84)||(29094145-29094206)
chr8 (138-198)||(42787411-42787471)
[»] chr5 (3 HSPs)
chr5 (124-215)||(11999750-11999841)
chr5 (131-201)||(9617992-9618062)
chr5 (136-177)||(31858912-31858953)
[»] chr1 (4 HSPs)
chr1 (131-201)||(5829961-5830031)
chr1 (137-183)||(30961244-30961290)
chr1 (137-201)||(42434143-42434207)
chr1 (138-183)||(29300662-29300707)
[»] chr6 (3 HSPs)
chr6 (84-177)||(2915743-2915835)
chr6 (137-183)||(748159-748205)
chr6 (131-184)||(4120772-4120825)
[»] chr3 (1 HSPs)
chr3 (137-178)||(30129803-30129844)
[»] chr2 (1 HSPs)
chr2 (137-178)||(6310243-6310284)
[»] chr4 (4 HSPs)
chr4 (137-185)||(1034504-1034552)
chr4 (136-183)||(19876971-19877018)
chr4 (136-183)||(49822292-49822339)
chr4 (144-184)||(1822277-1822317)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 83 - 233
Target Start/End: Complemental strand, 40404245 - 40404095
Alignment:
Q  83 aagagtgatgatacacaaacattcatagttggcacacaccattctacacactcctatgtggcatttttaattaattatattaagggtaattttgtccatt 182  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||    
T  40404245 aagagtgatgatacacaaacctccatagttggcacacaccattctacacactcccatgtggcatttttaattaattacattaagggtaattttgtcaatt 40404146  T
Q  183 caatctctcttccttcacctatctttaacctcacgcgactttcttcacccc 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40404145 caatctctcttccttcacctatctttaacctcacgcgactttcttcacccc 40404095  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 43353790 - 43353838
Alignment:
Q  137 tatgtggcatttttaattaattatattaagggtaattttgtccattcaa 185  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||    
T  43353790 tatgtggcatttttaattaatttttttaagggtaattttgtccattcaa 43353838  T

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Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 79 - 232
Target Start/End: Original strand, 24963048 - 24963201
Alignment:
Q  79 tttaaagagtgatgatacacaaacattcatagttggcacacaccattctacacactcctatgtggcatttttaattaattatattaagggtaattttgtc 178  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  24963048 tttatagagtgatgatacacaaacctccatagttggcacacaccattctaaacactcccatgtggcatttttaattaattacattaagggtaattttgtc 24963147  T
Q  179 cattcaatctctcttccttcacctatctttaacctcacgcgactttcttcaccc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24963148 cattcaatctctcttccttcacctatctttaacctcacgcgactttcttcaccc 24963201  T

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Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 38112484 - 38112633
Alignment:
Q  84 agagtgatgatacacaaacattcatagttggcacacaccattctacacactcctatgtggcatttttaattaattatattaagggtaattttgtccattc 183  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||    
T  38112484 agagtgatgatacacaaacctccatagttggcacacaccattctacacactctcatgtggcatttttaattaattacattaagggtaattttgtccattc 38112583  T
Q  184 aatctctcttccttcacctatctttaacctcacgcgactttcttcacccc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38112584 aatctctcttccttcacctatctttaacctcacgcgactttcttcacccc 38112633  T

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Target: chr8; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 85 - 233
Target Start/End: Complemental strand, 8750165 - 8750017
Alignment:
Q  85 gagtgatgatacacaaacattcatagttggcacacaccattctacacactcctatgtggcatttttaattaattatattaagggtaattttgtccattca 184  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||    
T  8750165 gagtgatgatacacaaacctccatagttggcacacaccattctacacactcccatgtggcatttttaattaattacattaagggtaattttgtctattca 8750066  T
Q  185 atctctcttccttcacctatctttaacctcacgcgactttcttcacccc 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8750065 atctctcttccttcacctatctttaacctcacgcgactttcttcacccc 8750017  T

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Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 41648663 - 41648542
Alignment:
Q  83 aagagtgatgatacacaaacattcatagttggcacacaccattctacacactcctatgtggcatttttaattaattatattaagggtaattttgtccatt 182  Q
    ||||||||||||| |||||||| ||||  ||||| ||| | ||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||    
T  41648663 aagagtgatgatatacaaacatccatacatggcatacatccttctacacactcccatgtggcatttttaaataattttattaagggtaattttgtccatt 41648564  T
Q  183 caatctctcttccttcacctatct 206  Q
    ||  ||||||||||||||| ||||    
T  41648563 ca--ctctcttccttcacccatct 41648542  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 29094206 - 29094145
Alignment:
Q  20 agataatcatgagctagtgtacaacgaatagttaaattagtctcttaatgcattaaaactttaaa 84  Q
    ||||||||||||||||||||| |||||||   |||||||||||||||||||||||||||||||||    
T  29094206 agataatcatgagctagtgtataacgaat---taaattagtctcttaatgcattaaaactttaaa 29094145  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 42787471 - 42787411
Alignment:
Q  138 atgtggcatttttaattaattatattaagggtaattttgtccattcaatctctcttccttc 198  Q
    |||||||||||||||||||||||||| | |||||||||||||||||| | |||||||||||    
T  42787471 atgtggcatttttaattaattatattgaaggtaattttgtccattcactttctcttccttc 42787411  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 11999750 - 11999841
Alignment:
Q  124 ttctacacactcctatgtggcatttttaattaattatattaagggtaattttgtccattcaatctctcttccttcacctatctttaacctca 215  Q
    |||||||||| || || || |||||||||||||||| ||| |||||||||||||| ||||| ||||||||||||| ||  ||||| ||||||    
T  11999750 ttctacacaccccaatatgccatttttaattaattacattgagggtaattttgtctattcactctctcttccttcccccgtctttgacctca 11999841  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 9617992 - 9618062
Alignment:
Q  131 cactcctatgtggcatttttaattaattatattaagggtaattttgtccattcaatctctcttccttcacc 201  Q
    ||||| |||||||||||||| |||||||  ||||||||||||| |||| |||| | |||||||||||||||    
T  9617992 cactcatatgtggcattttttattaatttcattaagggtaattctgtctattccaactctcttccttcacc 9618062  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 31858912 - 31858953
Alignment:
Q  136 ctatgtggcatttttaattaattatattaagggtaattttgt 177  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  31858912 ctatgtggcattgtttattaattatattaagggtaattttgt 31858953  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 5829961 - 5830031
Alignment:
Q  131 cactcctatgtggcatttttaattaattatattaagggtaattttgtccattcaatctctcttccttcacc 201  Q
    ||||| |||||||||||||| |||||||  ||||||||||||| |||| |||| | |||||||||||||||    
T  5829961 cactcatatgtggcattttttattaatttcattaagggtaattctgtctattccaactctcttccttcacc 5830031  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 30961244 - 30961290
Alignment:
Q  137 tatgtggcatttttaattaattatattaagggtaattttgtccattc 183  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  30961244 tatgtggcatttttaattaattttatcaagggtaattttgtcaattc 30961290  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 42434143 - 42434207
Alignment:
Q  137 tatgtggcatttttaattaattatattaagggtaattttgtccattcaatctctcttccttcacc 201  Q
    |||||||||||||| |||||||  | |||||||||||||||||||||   || ||||||||||||    
T  42434143 tatgtggcattttttattaatttcagtaagggtaattttgtccattcctactttcttccttcacc 42434207  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 29300662 - 29300707
Alignment:
Q  138 atgtggcatttttaattaattatattaagggtaattttgtccattc 183  Q
    ||||||||||||||| ||||| ||||||||||| |||| |||||||    
T  29300662 atgtggcatttttaaataattttattaagggtagttttatccattc 29300707  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 177
Target Start/End: Original strand, 2915743 - 2915835
Alignment:
Q  84 agagtgatgatacacaaacattcatagttggcacacaccattctacacactcctatgtggcatttttaattaattatattaagggtaattttgt 177  Q
    |||||| |||||||||||||||| ||  ||||| || || || ||||| ||||||||| |||||||| |||||||| |||||||| ||||||||    
T  2915743 agagtgctgatacacaaacattcttatgtggcaaacccccttatacac-ctcctatgtagcattttttattaattacattaagggcaattttgt 2915835  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 748205 - 748159
Alignment:
Q  137 tatgtggcatttttaattaattatattaagggtaattttgtccattc 183  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  748205 tatgtggcatttttaattaattttatcaagggtaattttgtcaattc 748159  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 4120772 - 4120825
Alignment:
Q  131 cactcctatgtggcatttttaattaattatattaagggtaattttgtccattca 184  Q
    ||||| ||||||| |||||| |||||||  |||||||||||||||||| |||||    
T  4120772 cactcatatgtggtattttttattaatttcattaagggtaattttgtcaattca 4120825  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 30129844 - 30129803
Alignment:
Q  137 tatgtggcatttttaattaattatattaagggtaattttgtc 178  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  30129844 tatgtggcatttttaattaattttattaagggtaattttgtc 30129803  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 6310284 - 6310243
Alignment:
Q  137 tatgtggcatttttaattaattatattaagggtaattttgtc 178  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  6310284 tatgtggcatttttaattaattttattaagggtaattttgtc 6310243  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 1034504 - 1034552
Alignment:
Q  137 tatgtggcatttttaattaattatattaagggtaattttgtccattcaa 185  Q
    ||||||||||||||||||| || | ||||||||||||||||||||||||    
T  1034504 tatgtggcatttttaattattttttttaagggtaattttgtccattcaa 1034552  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 19876971 - 19877018
Alignment:
Q  136 ctatgtggcatttttaattaattatattaagggtaattttgtccattc 183  Q
    ||||||||||||||||||||||| |||||||| || ||||||||||||    
T  19876971 ctatgtggcatttttaattaattttattaaggatagttttgtccattc 19877018  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 49822292 - 49822339
Alignment:
Q  136 ctatgtggcatttttaattaattatattaagggtaattttgtccattc 183  Q
    ||||||||||||||||||||||| |||||||| || ||||||||||||    
T  49822292 ctatgtggcatttttaattaattttattaaggatagttttgtccattc 49822339  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 1822277 - 1822317
Alignment:
Q  144 catttttaattaattatattaagggtaattttgtccattca 184  Q
    ||||||||||||||| |||||||| || |||||||||||||    
T  1822277 catttttaattaattttattaaggatagttttgtccattca 1822317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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