View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_low_46 (Length: 259)
Name: NF11645_low_46
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 39583498 - 39583723
Alignment:
| Q |
6 |
cagagaagaagtaaaacacgccgcagttgtttccttttctattgatcaggaacttggtttgtccttcaagtactttcagtttcggtatcactatcagtat |
105 |
Q |
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| T |
39583498 |
cagaaaagaagtaaaacacgccgcagttgtttccttttctattgatcaggaacttggtttgtccttcaagtactttcagtttcggtatcactatcagtat |
39583597 |
T |
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| Q |
106 |
ccgtatcactatctgtgtctgtgtcttcactttacctgtcactttcttccaaatatttcaggtaatagatacatatcaatgcagccgcagccgcagccgc |
205 |
Q |
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| T |
39583598 |
ccgtatcactatctgtgtctgtgtcttcactttcactgtcactttcttccaaatatttcaggtaatagatacatatcaat------------gcagccgc |
39583685 |
T |
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| Q |
206 |
agccataatcatctgcatatgcatacaatggagcattc |
243 |
Q |
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| T |
39583686 |
agccataatcatctgcatatgcatacaatggagcattc |
39583723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 154
Target Start/End: Complemental strand, 39627425 - 39627296
Alignment:
| Q |
28 |
gcagttgtttccttttctattgatcag---gaacttggtttgtccttcaagtactttcagtttcggtatcactatcagtatccgtatcactatctgtgtc |
124 |
Q |
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| T |
39627425 |
gcagctgtttccttttctattgatcatcaagaacttgatttgtccttccagtactttccgtttctgtatcgatatcagtatctgtatcattatcagtgtc |
39627326 |
T |
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| Q |
125 |
tgtgtcttcactttacctgtcactttcttc |
154 |
Q |
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| T |
39627325 |
cgtgtcttcactttcactatcactttcttc |
39627296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 39616697 - 39616604
Alignment:
| Q |
28 |
gcagttgtttccttttctattgatca---ggaacttggtttgtccttcaagtactttcagtttcggtatcactatcagtatccgtatcactatc |
118 |
Q |
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| T |
39616697 |
gcagctgtttccttttctattgatcatcaggaacttcatttgtccttccagtactttcagtttccgtatcaatatcagtatctgtatcactatc |
39616604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 47532851 - 47532759
Alignment:
| Q |
111 |
tcactatctgtgtctgtgtcttcactttacctgtcactttcttccaaatatttcaggtaatagatacatatcaatgcagccgcagccgcagcc |
203 |
Q |
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| T |
47532851 |
tcactatcagtatctgtggcttcactttcactgtcactttcttccaaaaggtacaggtcatagatgcatatcaaggcagctgcagctgcagcc |
47532759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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