View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11645_low_48 (Length: 252)

Name: NF11645_low_48
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11645_low_48
NF11645_low_48
[»] chr4 (2 HSPs)
chr4 (18-252)||(36567851-36568083)
chr4 (56-136)||(33696319-33696400)
[»] chr1 (2 HSPs)
chr1 (56-136)||(7946920-7947000)
chr1 (56-117)||(1378993-1379054)
[»] chr3 (2 HSPs)
chr3 (56-136)||(26174189-26174270)
chr3 (56-136)||(15566540-15566620)
[»] chr2 (1 HSPs)
chr2 (56-136)||(11941250-11941331)
[»] scaffold0623 (1 HSPs)
scaffold0623 (56-135)||(1096-1176)
[»] scaffold0366 (1 HSPs)
scaffold0366 (56-135)||(9339-9419)
[»] scaffold0016 (1 HSPs)
scaffold0016 (56-135)||(32365-32445)
[»] chr7 (1 HSPs)
chr7 (56-136)||(654745-654825)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 36567851 - 36568083
Alignment:
Q  18 acagattacaagggttcagtcgg-ccgacaaatttgggagaccaatctcaccatccactagcgggtgcccatttaaagcaagaggaggctctgtatggac 116  Q
    ||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  36567851 acagattactagggtccagtcgggccgacaaatttggaagaccaatctcaccatccactagcgggtgcccatttaaagcaagagcaggctctgtacggac 36567950  T
Q  117 taaacccacaaaaattggcattgggaatgtgaggagcacactccgaggtccaatttataagtttaccccttctaacgaaacaaaaacaaaaattcacaca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36567951 taaacccacaaaaattggcattgggaatgtgaggagcacactccgaggtccaatttataagtttaccccttctaacgaaacaaaaacaaaaattcacacg 36568050  T
Q  217 caataagaagaacaaaggtggcaaaatgaaacctcc 252  Q
    ||||   |||||||||||||||||||||||||||||    
T  36568051 caat---aagaacaaaggtggcaaaatgaaacctcc 36568083  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 33696319 - 33696400
Alignment:
Q  56 gaccaatctcaccatccactagcgggtgccc-atttaaagcaagaggaggctctgtatggactaaacccacaaaaattggca 136  Q
    |||||||||||||  ||||| ||||| |||| ||||||||| |||| | |||||||||||||| | |||||  |||||||||    
T  33696319 gaccaatctcaccgcccacttgcgggggccccatttaaagccagagcaagctctgtatggacttagcccaccgaaattggca 33696400  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 7947000 - 7946920
Alignment:
Q  56 gaccaatctcaccatccactagcgggtgcccatttaaagcaagaggaggctctgtatggactaaacccacaaaaattggca 136  Q
    |||||||||||||| ||||| |||||  |||||||||||| |||| | ||||||||| |||| | |||||  |||||||||    
T  7947000 gaccaatctcaccacccacttgcggggccccatttaaagcgagagcaagctctgtatagacttagcccaccgaaattggca 7946920  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 1379054 - 1378993
Alignment:
Q  56 gaccaatctcaccatccactagcgggtgcccatttaaagcaagaggaggctctgtatggact 117  Q
    ||||||||||||| |||||| ||||| |||| |||||||| |||| | | ||||||||||||    
T  1379054 gaccaatctcaccgtccacttgcgggggcccgtttaaagccagagcaagttctgtatggact 1378993  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 26174270 - 26174189
Alignment:
Q  56 gaccaatctcaccatccactagcgggtgccc-atttaaagcaagaggaggctctgtatggactaaacccacaaaaattggca 136  Q
    |||||||| ||||  ||||| ||||| |||| ||||||||| |||| | |||||||||||||| |||||||  |||||||||    
T  26174270 gaccaatcccaccgcccacttgcgggggccctatttaaagccagagcaagctctgtatggacttaacccaccgaaattggca 26174189  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 15566540 - 15566620
Alignment:
Q  56 gaccaatctcaccatccactagcgggtgcccatttaaagcaagaggaggctctgtatggactaaacccacaaaaattggca 136  Q
    |||||||| ||||  ||||| ||||| |||| |||||||| |||| | |||||||||||||| | |||||  |||||||||    
T  15566540 gaccaatcccaccgcccacttgcgggggcccgtttaaagccagagcaagctctgtatggacttagcccaccgaaattggca 15566620  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 11941250 - 11941331
Alignment:
Q  56 gaccaatctcaccatccactagcgggtg-cccatttaaagcaagaggaggctctgtatggactaaacccacaaaaattggca 136  Q
    |||||||| ||||  ||||| ||||| | ||| |||||||| |||| | |||||||||||||| ||||||| ||||||||||    
T  11941250 gaccaatcccaccgcccacttgcgggggtcccgtttaaagccagagcaagctctgtatggacttaacccaccaaaattggca 11941331  T

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Target: scaffold0623 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 1096 - 1176
Alignment:
Q  56 gaccaatctcaccatccactagcgggtgccc-atttaaagcaagaggaggctctgtatggactaaacccacaaaaattggc 135  Q
    |||||||| |||| |||||| ||||| |||| ||||||||| |||| | |||||||||||||| | |||||  ||||||||    
T  1096 gaccaatcccaccgtccacttgcgggggccccatttaaagccagagcaagctctgtatggacttagcccaccgaaattggc 1176  T

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Target: scaffold0366 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 9339 - 9419
Alignment:
Q  56 gaccaatctcaccatccactagcgggtgccc-atttaaagcaagaggaggctctgtatggactaaacccacaaaaattggc 135  Q
    |||||||| |||| |||||| ||||| |||| ||||||||| |||| | |||||||||||||| | |||||  ||||||||    
T  9339 gaccaatcccaccgtccacttgcgggggccccatttaaagccagagcaagctctgtatggacttagcccaccgaaattggc 9419  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 32445 - 32365
Alignment:
Q  56 gaccaatctcaccatccactagcgggtgcc-catttaaagcaagaggaggctctgtatggactaaacccacaaaaattggc 135  Q
    |||||||| ||||| ||||| ||||| ||| |||||||||| |||| | |||||||||||||| | |||||  ||||||||    
T  32445 gaccaatcccaccacccacttgcgggggccacatttaaagccagagcaagctctgtatggacttagcccaccgaaattggc 32365  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 654745 - 654825
Alignment:
Q  56 gaccaatctcaccatccactagcgggtgcccatttaaagcaagaggaggctctgtatggactaaacccacaaaaattggca 136  Q
    |||||||| ||||  ||||| ||||| |||| |||||||| |||| | |||||||||||||| | |||||  |||||||||    
T  654745 gaccaatcccaccgcccacttgcgggggcccgtttaaagccagagcaagctctgtatggacttagcccaccgaaattggca 654825  T

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