View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11645_low_52 (Length: 249)
Name: NF11645_low_52
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_low_52 |
 | |
|
| [»] scaffold0170 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0170 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: scaffold0170
Description:
Target: scaffold0170; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 122 - 240
Target Start/End: Complemental strand, 7341 - 7223
Alignment:
| Q |
122 |
agtagggatgttcgcggtgcggttttgagaaaaaagtcattttaaccgtgagataaaaaagcatgcggttcgacttaattcggttgtgtcataccccaaa |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
7341 |
agtagggatgttcgcggtgcggttttgagaaaaaagtcattttaaccgtgagatacaaaagcatgcggttcgacttagttcggttgtgtcataccctaaa |
7242 |
T |
|
| Q |
222 |
ctttcaccacttttctctg |
240 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
7241 |
ttttgaccacttttctctg |
7223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0170; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 7523 - 7399
Alignment:
| Q |
1 |
taaatattatgaatgatctgattcgatcagaagaacgacgtatggtgtggcaagcttgatgctaattgaatgtttggaacgacgagggtggtgtacctgt |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
7523 |
taaatgttatgaatgatctgattcgatcagaagaacgacgtctggtgtggtaagcttgatgctaattgaatgtttttaacgatgagggtggtgtacctgt |
7424 |
T |
|
| Q |
101 |
aggttctccgatgctcaagttagta |
125 |
Q |
| |
|
||||||| ||| |||||||| |||| |
|
|
| T |
7423 |
aggttcttcgacgctcaagtcagta |
7399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 24361606 - 24361556
Alignment:
| Q |
141 |
cggttttgagaaaaaagtcattttaaccgtgagataaaaaagcatgcggtt |
191 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||| |||| |||| |
|
|
| T |
24361606 |
cggttttgagaaaaaagtcatctaaaccgtgagataaaaaaacatgtggtt |
24361556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 42544628 - 42544679
Alignment:
| Q |
141 |
cggttttgag-aaaaaagtcattttaaccgtgagataaaaaagcatgcggtt |
191 |
Q |
| |
|
|||||||||| ||||||||||| | ||||| ||||||||||||||||||||| |
|
|
| T |
42544628 |
cggttttgagcaaaaaagtcatctaaaccgcgagataaaaaagcatgcggtt |
42544679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 9160950 - 9160999
Alignment:
| Q |
141 |
cggttttgagaaaaaagtcattttaaccgtgagataaaaaagcatgcggtt |
191 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
9160950 |
cggttttgagaaaaaagtcattcaaaccgcgagat-aaaaagcatgcggtt |
9160999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 41325079 - 41325132
Alignment:
| Q |
154 |
aaagtcattttaaccgtgagataaaaaagcatgcggttcgacttaattcggttg |
207 |
Q |
| |
|
|||||||||| ||||| |||||||| ||| |||||||| || |||||||||||| |
|
|
| T |
41325079 |
aaagtcatttgaaccgcgagataaataagtatgcggtttgatttaattcggttg |
41325132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 29389013 - 29389053
Alignment:
| Q |
151 |
aaaaaagtcattttaaccgtgagataaaaaagcatgcggtt |
191 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29389013 |
aaaaaagtcatccaaaccgtgagataaaaaagcatgcggtt |
29389053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University