View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11645_low_54 (Length: 246)
Name: NF11645_low_54
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 34 - 232
Target Start/End: Original strand, 41566932 - 41567130
Alignment:
| Q |
34 |
aataaaaatacacatagcaaaaagtggacattgtttgttttgttccattccaagaaaagggtgaggtgaggccttataacacccacgcttctctctttct |
133 |
Q |
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| T |
41566932 |
aataaaaatacacatagcaaaaagtggacattgtt-gttttgttccattccaagaaaagggtgaggtgaggccttataacacccacgcttctctctttct |
41567030 |
T |
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| Q |
134 |
cttcgttcttttttattggtccattcgtattgcagcatcgcacttctcttctccttcattctcatgctccaatcttaatgataaaaccc-gttatgggtg |
232 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41567031 |
cttcgttcttttttattggtccattcttattgcagcatcgcacttctcttctccttcattctcatgctccaatcttaatgataaaacccggttatgggtg |
41567130 |
T |
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