View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11645_low_57 (Length: 241)
Name: NF11645_low_57
Description: NF11645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11645_low_57 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10595378 - 10595156
Alignment:
| Q |
1 |
catatacatgaattgcagttaaatatcgttgctgctcaatgaccaaacacaaataaattatattaactaagacagattttgacgaatttttgcacggatt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10595378 |
catatacgtgaattgcagttaaatatcgttgctgctcaatgaccaaacacaaataaattatattaactaagacagattttgacgaatttttgcacggatt |
10595279 |
T |
|
| Q |
101 |
ctctttactggttagtaataacagaaaaaccaagaaagatagaaaagagaaacaatcaacattaaaacaataaattcttcttggtcctatagatccaaat |
200 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10595278 |
ctctttattggttagcaataacagaaaaaccaagaaagatagaaaagagaaacaatcaacattaaaacaataaattcttcttggtcctatagatcctaat |
10595179 |
T |
|
| Q |
201 |
atcctatcatctttggcataaaa |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
10595178 |
atcctatcatctttggcataaaa |
10595156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University