View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_high_11 (Length: 470)
Name: NF11646_high_11
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 49521523 - 49521070
Alignment:
| Q |
1 |
tgaagcatcgcagaagcgaacagttatcagtttcataggcggtattgatctttgcgatggaagatatgatacaatggaacatcctttgttttcgacattg |
100 |
Q |
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| T |
49521523 |
tgaagcatcgcagaagcgaacagttatcagtttcataggcggtattgatctttgcgatggaagatatgatacaatggaacatcctttgttttcaacattg |
49521424 |
T |
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| Q |
101 |
aatacaatccatcatgatgattttcatcaaccaaatttcccaggtgcttctattaagaaaggtggtcctagagaaccgtggcatgatattcactgcaagc |
200 |
Q |
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| T |
49521423 |
aatacaatccatcatgatgattttcatcaaccaaatttcccaggtgcttctattaagaaaggtggtcctagagaaccgtggcatgatattcactgcaagc |
49521324 |
T |
|
| Q |
201 |
tagaaggacctattgcatgggatgtgttgtacaattttgagcagaggtgggaaaagcaagttgggaagcaattcctattcccaattgaagtgcttgatag |
300 |
Q |
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| T |
49521323 |
tagaaggacctattgcatgggatgtgttgtacaattttgagcagaggtgggaaaagcaagttgggaagcaattcctattcccaattgaagtgcttgatag |
49521224 |
T |
|
| Q |
301 |
aattctaatccacccttctgatgcaatgctatcagaagaagatggcgaaacttggagtgttcagttgtttagatccattgatggtggagctgtttctaac |
400 |
Q |
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| T |
49521223 |
aattctaatccacccttctgatgcaatgctatcagaagaagatggcgaaacttggagtgttcagttgtttagatccattgatggtggtgctgtttctaac |
49521124 |
T |
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| Q |
401 |
ttccctcaagcaccaaatgaagttatagaattaggccttgttagcggaaaagac |
454 |
Q |
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| T |
49521123 |
ttccctcaagcaccaaatgaagttatagaattaggccttgttagtggaaaagac |
49521070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 141 - 273
Target Start/End: Complemental strand, 49510240 - 49510108
Alignment:
| Q |
141 |
caggtgcttctattaagaaaggtggtcctagagaaccgtggcatgatattcactgcaagctagaaggacctattgcatgggatgtgttgtacaattttga |
240 |
Q |
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|||||||||||||||| ||||||||||||||||| || |||||||||||||| || || |||||||||||| |||| ||||||||||||| ||||||||| |
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| T |
49510240 |
caggtgcttctattaataaaggtggtcctagagagccatggcatgatattcattgtaaactagaaggacctgttgcttgggatgtgttgtgcaattttga |
49510141 |
T |
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| Q |
241 |
gcagaggtgggaaaagcaagttgggaagcaatt |
273 |
Q |
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| T |
49510140 |
gcaaagatgggaaaagcaagttggaaaacaatt |
49510108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 49510533 - 49510428
Alignment:
| Q |
41 |
ggtattgatctttgcgatggaagatatgatacaatggaacatcctttgttttcgacattgaatacaatccatcatgatgattttcatcaaccaaatttcc |
140 |
Q |
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| T |
49510533 |
ggtattgatctttgtgatgggagatatgataccatggaacatcctttgttttcaactctgaatacaattcatcatgatgattttcatcaaccaaatttcc |
49510434 |
T |
|
| Q |
141 |
caggtg |
146 |
Q |
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|||||| |
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| T |
49510433 |
caggtg |
49510428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 246
Target Start/End: Original strand, 44662302 - 44662438
Alignment:
| Q |
110 |
catcatgatgattttcatcaaccaaatttcccaggtgcttctattaagaaaggtggtcctagagaaccgtggcatgatattcactgcaagctagaaggac |
209 |
Q |
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|||||||||||||||||||| || || || || |||||||| || | |||||||||||||| ||||| ||||||||||| |||| | ||| ||||| | |
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| T |
44662302 |
catcatgatgattttcatcagcctaactttcctggtgcttcaatagaaaaaggtggtcctagggaaccttggcatgatatccactcaaggcttgaaggtc |
44662401 |
T |
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| Q |
210 |
ctattgcatgggatgtgttgtacaattttgagcagag |
246 |
Q |
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| T |
44662402 |
ccattgcttgggatgttttgtttaactttgagcagag |
44662438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 230
Target Start/End: Complemental strand, 2416753 - 2416636
Alignment:
| Q |
113 |
catgatgattttcatcaaccaaatttcccaggtgcttctattaagaaaggtggtcctagagaaccgtggcatgatattcactgcaagctagaaggaccta |
212 |
Q |
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|||||||||||||||||||| || || ||||||||| | || | ||||| ||||| || ||||| |||||||| ||||| | | || |||||||| | |
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| T |
2416753 |
catgatgattttcatcaacctaactttccaggtgctgcaatcacaaaaggcggtccaagggaaccttggcatgacattcattcccgccttgaaggaccga |
2416654 |
T |
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| Q |
213 |
ttgcatgggatgtgttgt |
230 |
Q |
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|||| ||||||||||||| |
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| T |
2416653 |
ttgcttgggatgtgttgt |
2416636 |
T |
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