View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_high_12 (Length: 468)
Name: NF11646_high_12
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 75 - 462
Target Start/End: Complemental strand, 43170640 - 43170255
Alignment:
| Q |
75 |
gtgtttgtgaaaatgattttgcagagttgtgagataactttgaatgccacagatatcttggaatgtttccccttgaatttattagactggggtagaactg |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43170640 |
gtgtttgtgaaaatgattttgcagagttgtgagataactttgaatgccacagatatcttggaatgtttccccttgaatttattagattggggtagaactg |
43170541 |
T |
|
| Q |
175 |
gtgtcctttccatagcactcaatgatacagttgttctttgtagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcc |
274 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43170540 |
gtgtcctttccatagcactcaatgatatagttgttctttgtagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcc |
43170441 |
T |
|
| Q |
275 |
tatcacaagtgttagctgggagccagatggacacatttaagccattggtttcatgaattccattgtccagctctgggatacatctactatgacacgggta |
374 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43170440 |
tatcacaagtgttagctggcagccagatggacacattttagccattggtttgatgaattccattgtccagctctgggatacatctactatgacacgggta |
43170341 |
T |
|
| Q |
375 |
aatgctgctcgtgttctttgtattgtttttaaacttgaaattgttctctactctcatgtttgtgtggttttattttggtctctgctgc |
462 |
Q |
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| T |
43170340 |
aa--ctgcttgtgttctttgtattgtttttaaacttgaaatttttctctattctcatgtttgtgtggttttattttggtcactgctgc |
43170255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 75 - 462
Target Start/End: Original strand, 43217696 - 43218081
Alignment:
| Q |
75 |
gtgtttgtgaaaatgattttgcagagttgtgagataactttgaatgccacagatatcttggaatgtttccccttgaatttattagactggggtagaactg |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43217696 |
gtgtttgtgaaaatgattttgcagagttgtgagataactttgaatgccacagatatcttggaatgtttccccttgaatttattagattggggtagaactg |
43217795 |
T |
|
| Q |
175 |
gtgtcctttccatagcactcaatgatacagttgttctttgtagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcc |
274 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43217796 |
gtgtcctttccatagcactcaatgatattgttgttctttgtagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcc |
43217895 |
T |
|
| Q |
275 |
tatcacaagtgttagctgggagccagatggacacatttaagccattggtttcatgaattccattgtccagctctgggatacatctactatgacacgggta |
374 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43217896 |
tatcacaagtgttagctggcagccagatggacacattttagccattggtttgatgaattccattgtccagctctgggatacatctactatgacacgggta |
43217995 |
T |
|
| Q |
375 |
aatgctgctcgtgttctttgtattgtttttaaacttgaaattgttctctactctcatgtttgtgtggttttattttggtctctgctgc |
462 |
Q |
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|| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
43217996 |
aa--ctgcttgtgttctttgtattgtttttaaacttgaaattgttctctattctcatgtttgtgtggttttattttggtcactgctgc |
43218081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 43217478 - 43217522
Alignment:
| Q |
19 |
gtaatatttattt-gtccattctacataccataaggactaatttt |
62 |
Q |
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||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
43217478 |
gtaatatttattttgtccattctacatacaataaggactaatttt |
43217522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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