View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_high_13 (Length: 466)
Name: NF11646_high_13
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 44 - 456
Target Start/End: Complemental strand, 26805678 - 26805266
Alignment:
| Q |
44 |
tgcacgattcactatttgtacgtaaatgaaagaaaataagaaataagagagattaacgttgaaggtaccttgcgacgtagggtggtgatagggttatctg |
143 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26805678 |
tgcacgattcactatttgtacgtaaatgaaagaaaataagaaataagagagattaacgttgaaggtaccttgcgacgtagggtggtgatagggttatctg |
26805579 |
T |
|
| Q |
144 |
cggcatcaaccaagacacggcggtcacggaaggttaaaagagaacctttaactttgaagacaatattgccgttgacatcggtgacgacgaagtttccgtc |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26805578 |
cggcatcaaccaagacacggcggtcacggaaggttaaaagagaaactttaactttgaagacaatattgccgttgacatcggtgacgacgaagtttccgtc |
26805479 |
T |
|
| Q |
244 |
tgaaattgctatcacctttttgaccacagccaaatccaatggatatggagcacaatattgagggccaaatatggtggttggaagcaccggcatcggcggt |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26805478 |
tgaaattgctatcacctttttgaccacagccaaatccaatggatacggagcacaatattgagggccaaatatggtggttggaagcaccggcatcggcggt |
26805379 |
T |
|
| Q |
344 |
gcagaggcagatggttgtggttgataaggataagccatgatgatagcgatgatatgaatgttatgttttgttatgaacttatgatagctctttaatttta |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26805378 |
gcagaggcagatggttgtggttgataaggataagccatgatgatagtgatgatatgaatgttatgttttgttatgaacttatgatagctctttaatttta |
26805279 |
T |
|
| Q |
444 |
atttgtctctgtg |
456 |
Q |
| |
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||||||||||||| |
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| T |
26805278 |
atttgtctctgtg |
26805266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 87 - 386
Target Start/End: Complemental strand, 26800533 - 26800234
Alignment:
| Q |
87 |
taagagagattaacgttgaaggtaccttgcgacgtagggtggtgatagggttatctgcggcatcaaccaagacacggcggtcacggaaggttaaaagaga |
186 |
Q |
| |
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||||||||| ||| |||||| |||||||||||| | ||| | ||| |||| | | ||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
26800533 |
taagagagagtaaaattgaagataccttgcgacgcaaggttgcgatggggtaaccagcggcatcaaccaagacacggcggtcacggagggttaagagaga |
26800434 |
T |
|
| Q |
187 |
acctttaactttgaagacaatattgccgttgacatcggtgacgacgaagtttccgtctgaaattgctatcacctttttgaccacagccaaatccaatgga |
286 |
Q |
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|||||| |||||||| || || |||||||||||||| |||||| | |||||||| |||||||| | || |||||||| || ||||||||||||| ||| |
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| T |
26800433 |
accttttactttgaacacgatgttgccgttgacatcagtgacggcaaagtttccatctgaaatggtcataacctttttcacgacagccaaatccaccgga |
26800334 |
T |
|
| Q |
287 |
tatggagcacaatattgagggccaaatatggtggttggaagcaccggcatcggcggtgcagaggcagatggttgtggttgataaggataagccatgatga |
386 |
Q |
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| T |
26800333 |
tatggagcacaatattgctgtccgaatatggcagtggggtgtgccggcatcggcggtgcagaagcatattgctgtggttgataaggataagccataatga |
26800234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 88 - 317
Target Start/End: Complemental strand, 26795741 - 26795512
Alignment:
| Q |
88 |
aagagagattaacgttgaaggtaccttgcgacgtagggtggtgatagggttatctgcggcatcaaccaagacacggcggtcacggaaggttaaaagagaa |
187 |
Q |
| |
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|||||||| ||| || ||| |||||| ||||| ||||||||||| |||||| | || ||||||| |||||||||||| ||||||| |||||| ||||| |
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| T |
26795741 |
aagagagaataaagtggaacctaccttacgacggagggtggtgatggggttaccagcagcatcaagcaagacacggcgatcacggagggttaagagagag |
26795642 |
T |
|
| Q |
188 |
cctttaactttgaagacaatattgccgttgacatcggtgacgacgaagtttccgtctgaaattgctatcacctttttgaccacagccaaatccaatggat |
287 |
Q |
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||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| | ||||||||||| ||||| || | ||||| |||| |
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| T |
26795641 |
cctttaactttgaagacaatattgccgttgacatcagtaacagcgaagtttccgtctgaaatggtcatcacctttttcaccacggcaagatccaccggat |
26795542 |
T |
|
| Q |
288 |
atggagcacaatattgagggccaaatatgg |
317 |
Q |
| |
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| T |
26795541 |
acggagcacaatattgaggaccgaatatgg |
26795512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 88 - 389
Target Start/End: Complemental strand, 26836331 - 26836036
Alignment:
| Q |
88 |
aagagagattaacgttgaaggtaccttgcgacgtagggtggtgatagggttatctgcggcatcaaccaagacacggcggtcacggaaggttaaaagagaa |
187 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||||||||||| |||| |||||| | || |||||||||||||||||| ||||||| | ||| || | |||| |
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| T |
26836331 |
aagagagaataaagttgaacataccttgcgacgtagggtgatgatggggttaccggccgcatcaaccaagacacggtggtcacgtatggtaaacacagaa |
26836232 |
T |
|
| Q |
188 |
cctttaactttgaagacaatattgccgttgacatcggtgacgacgaagtttccgtctgaaattgctatcacctttttgaccacagccaaatccaatggat |
287 |
Q |
| |
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|| ||||||||||| || || |||||||||||||| || ||| ||||| ||||| ||| | ||||||||||| ||||| || | |||| |||| |
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| T |
26836231 |
cccttaactttgaaaactatgttgccgttgacatcagtaacggttaagtt---gtctgcaatggtcatcacctttttcaccaccgcgagttccaccggat |
26836135 |
T |
|
| Q |
288 |
atggagcacaatattgagggccaaatatggtggttggaagcaccggcatcggcggtgcagaggcagatggttgtggttgataaggataagccatgatgat |
387 |
Q |
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|||||| ||||||||||||||| | ||||||||| || || ||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
26836134 |
atggagtacaatattgagggcctattatggtggtggggagtggtggcat---cggtgcagaggaagaaggttgtggttgataaggataagccatgatgat |
26836038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 254 - 381
Target Start/End: Complemental strand, 26824293 - 26824166
Alignment:
| Q |
254 |
atcacctttttgaccacagccaaatccaatggatatggagcacaatattgagggccaaatatggtggttggaagcaccggcatcggcggtgcagaggcag |
353 |
Q |
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||||||||||| || || ||||||| || ||||| ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26824293 |
atcacctttttcactacggccaaattcaccggatacggatcacaatattgagggcatattatggtggttggaagcaccggcatcggcggtgcagaggcag |
26824194 |
T |
|
| Q |
354 |
atggttgtggttgataaggataagccat |
381 |
Q |
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|||||||||||||| ||||||||||||| |
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| T |
26824193 |
atggttgtggttgacaaggataagccat |
26824166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 26789810 - 26789721
Alignment:
| Q |
109 |
taccttgcgacgtagggtggtgatagggttatctgcggcatcaaccaagacacggcggtcacggaaggttaaaagagaacctttaacttt |
198 |
Q |
| |
|
|||||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| |
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| T |
26789810 |
taccttgcgacgtagggtggtgatggggttaccggaggcatcaaccaagacacggcggtcacggagggttaagagagaacctttgacttt |
26789721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 341 - 388
Target Start/End: Complemental strand, 26824134 - 26824087
Alignment:
| Q |
341 |
ggtgcagaggcagatggttgtggttgataaggataagccatgatgata |
388 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
26824134 |
ggtgcagaggcagaaggttgtggttgataaggataagccatgatgata |
26824087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 382
Target Start/End: Complemental strand, 26795488 - 26795447
Alignment:
| Q |
341 |
ggtgcagaggcagatggttgtggttgataaggataagccatg |
382 |
Q |
| |
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||||||||||||||||| |||| | ||||||||||||||||| |
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| T |
26795488 |
ggtgcagaggcagatggctgtgctggataaggataagccatg |
26795447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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