View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_high_16 (Length: 432)
Name: NF11646_high_16
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 55309725 - 55309373
Alignment:
| Q |
19 |
cataattgaaaatattcaactataaatttttaagattttgaaaaattatttcttattttcaaatgaattgtacaccagttgatatacaacacgttgtacg |
118 |
Q |
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| T |
55309725 |
cataattgaaaatattcaactataaatttttaagattttgaaaaattatttcttattttcaaatgaattgtacaccagttgatatacaacacgttgtacg |
55309626 |
T |
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| Q |
119 |
ttgttataataggcaggcccaaattgtaatgagacttgatattttgcagttcaaccccatttttatgcattccttatagttttgagctggtttaattaag |
218 |
Q |
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| T |
55309625 |
ttgttataataggcagacccaaattgtaatgagacttgatattttgcagttcaaccccatttttatgcattccttgtagttttgagctggtttaattaag |
55309526 |
T |
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| Q |
219 |
tgtaataggattgattgcacattgtgtcatgccgaatttgaactctctaattagttagtt-----gcaaagcaatagaaaactctatgtttggatatgta |
313 |
Q |
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| T |
55309525 |
tgtaataggattgattgcacattgtgtcatgccgaatttgaactctctaattagttagttctctggcaaagcaatagaaaactctatgtttggatatgta |
55309426 |
T |
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| Q |
314 |
tgccacattcactgtcaatctaaacatgcacttatagacactttgttaagtta |
366 |
Q |
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| T |
55309425 |
tgccacattcactgtcaatctaaacatgcacttatagacactttgttaagtta |
55309373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 363 - 417
Target Start/End: Complemental strand, 55309212 - 55309158
Alignment:
| Q |
363 |
gttagattatatttgataaaccacataaaatcgctgtgtgcattcttcttctgtg |
417 |
Q |
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| T |
55309212 |
gttagattatatttgataaaccacataaaatcgttgtgtgcattcttcttctgtg |
55309158 |
T |
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