View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_high_18 (Length: 400)
Name: NF11646_high_18
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 382
Target Start/End: Original strand, 32931325 - 32931698
Alignment:
| Q |
11 |
cagagaagaacactaaagtgtagacaacactagcaacgggataaagagaccgacaagaaacacaaaaggaaaaattaaccaatggcaatacaaacaaaag |
110 |
Q |
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| T |
32931325 |
cagagaagaacaataaagtgtagacaacactagcaacgggataaagagaccgacaataaacacaaaaggaaaaattaaccaatggcaagacaaacaaaag |
32931424 |
T |
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| Q |
111 |
gaataagccaccaactataatagtcaaaaacaaaaataacatattttgttttcagccaccgnnnnnnng-cagcttaattttatccataaacagatggga |
209 |
Q |
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| T |
32931425 |
gaataagccaccaactatgataatcaaaaataaaaataacatattttattttcaggcatcggaaaaaaaacagcttaattttatccataagcggatggaa |
32931524 |
T |
|
| Q |
210 |
taaagttgtcttatttttaaaaattatgctattccgttcactccaaattatgcaagcattagagaggcaaactaaatgcatcatggatggacg-gcttct |
308 |
Q |
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| T |
32931525 |
tgaagttgtcttatttttaaaaattctgctattctgttcactccaaattacccaagcattaaagaggcaaactaaatgcatcatggatagacgagcttct |
32931624 |
T |
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| Q |
309 |
gaggcacctgttgaataaccaaacttatggaatatatgtttggttcaaaaaagttgagaggaggacaataattt |
382 |
Q |
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| T |
32931625 |
gaggcacctgttgaataaccaaacttatggaatatatgtttggttcaaaaaagttgagaggaggacaataattt |
32931698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 21215796 - 21215901
Alignment:
| Q |
51 |
ataaagagaccgacaagaaacacaaaaggaaaaattaaccaatggcaatacaaacaaaaggaataagccaccaactataatagtcaaaaacaaaaataac |
150 |
Q |
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| T |
21215796 |
ataaagagaccgacaaaaaacacaa--ggaaaaattaatcaatgccaaaacaaacaaaaggagaaatccaccaactatgatagccaaaagcaaaattaac |
21215893 |
T |
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| Q |
151 |
atattttg |
158 |
Q |
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|||||||| |
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| T |
21215894 |
atattttg |
21215901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 169
Target Start/End: Original strand, 32152860 - 32152968
Alignment:
| Q |
62 |
gacaagaaacacaaaaggaa-aaattaaccaatggcaatacaaacaaaaggaataagccaccaactataatagtcaaaaacaaaaataacatattttgtt |
160 |
Q |
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||||| ||||||||||||| ||||||||| ||||| | ||||||||||||| ||||||||||||| ||| |||||| ||| | || |||||||||| |
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| T |
32152860 |
gacaaaaaacacaaaaggagtaaattaacccatggccaaacaaacaaaaggacaaagccaccaactacgataatcaaaagcaatattagcatattttgtc |
32152959 |
T |
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| Q |
161 |
ttcagccac |
169 |
Q |
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||||||||| |
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| T |
32152960 |
ttcagccac |
32152968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 36565083 - 36564970
Alignment:
| Q |
49 |
ggataaagagaccgacaagaaacacaaaaggaaaaattaaccaatggcaatacaaacaaaaggaataagccaccaactataatagtcaaaaacaaaaata |
148 |
Q |
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|||||||||||||| ||| |||||||| | |||||||||||||| ||| ||||||||||||| |||||| ||||||| ||| |||| |||| || |
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| T |
36565083 |
ggataaagagaccggcaaaaaacacaaga--aaaaattaaccaatttcaagacaaacaaaaggagaaagccatcaactatgataacaaaaagcaaagtta |
36564986 |
T |
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| Q |
149 |
acatattttgttttca |
164 |
Q |
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| T |
36564985 |
acatattttgttttca |
36564970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 36543240 - 36543353
Alignment:
| Q |
49 |
ggataaagagaccgacaagaaacacaaaaggaaaaattaaccaatggcaatacaaacaaaaggaataagccaccaactataatagtcaaaaacaaaaata |
148 |
Q |
| |
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|||||||||||||| ||| |||||||| | |||||||||||||| ||| ||||||||||||| |||||| ||||||| ||| |||| |||| || |
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| T |
36543240 |
ggataaagagaccggcaaaaaacacaaga--aaaaattaaccaatttcaagacaaacaaaaggagaaagccatcaactatgataacaaaaagcaaagtta |
36543337 |
T |
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| Q |
149 |
acatattttgttttca |
164 |
Q |
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|||| ||||||||||| |
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| T |
36543338 |
acatgttttgttttca |
36543353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 157
Target Start/End: Complemental strand, 19534165 - 19534069
Alignment:
| Q |
62 |
gacaagaaacacaaaaggaa-aaattaaccaatggcaatacaaacaaaaggaataagccaccaactataatagtcaaaaacaaaaataacatatttt |
157 |
Q |
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||||| |||||||||||||| ||||| ||| ||| | | ||||||||||||| |||||| ||||| |||| |||||||||| | ||||||||||| |
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| T |
19534165 |
gacaaaaaacacaaaaggaataaatttacctatgtccaaacaaacaaaaggacaaagccattaactacaataatcaaaaacaatattaacatatttt |
19534069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 27287801 - 27287886
Alignment:
| Q |
212 |
aagttgtcttatttttaaaaattatgctattccgttcactccaaattatgcaagcattagagaggcaaactaaatgcatcatggat |
297 |
Q |
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|||||||| ||||||| ||||| || |||||| |||| ||||||||| || |||| ||| || ||||||||||||||||||||| |
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| T |
27287801 |
aagttgtcctattttttaaaatcttgttattcctttcattccaaattacccacgcataagaaagtcaaactaaatgcatcatggat |
27287886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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