View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_high_20 (Length: 385)
Name: NF11646_high_20
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_high_20 |
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| [»] scaffold0430 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 56 - 381
Target Start/End: Original strand, 48532337 - 48532661
Alignment:
| Q |
56 |
gtgcgtttgttttgttaaaatttaagggactggacaggacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaaggacaacacaaaataaataa |
155 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48532337 |
gtgcgtttgttttgttaaaatttaagggactggacaggacaaaaatatttgcaccgcgtttgatttattaaaacgaaaaaggacaacacaaaataaataa |
48532436 |
T |
|
| Q |
156 |
tcaaggacaggacaagtaaccacttttttgtccaccactttagtgggggacaactttttgtccagcggattactaacccaaaaagacgtttttatccttt |
255 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48532437 |
tcaaggactc-acaagtaaccacttttttgtccaccactttagtgggggacaactttttgtccagcggattactaacccaaaaagacgtttttatccttt |
48532535 |
T |
|
| Q |
256 |
ggatcttaggttttctcgctatctcacttcttcacaacactgttcacgtccttcctgctaacttagactgcggctgcttctctatttgtcaggtaacaat |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48532536 |
ggatcttaggttttctcgctatctcacttcttcacaacattgttcacgtccttcctgctaacttagactgcggctgcttctctatttgtcaggtaacaat |
48532635 |
T |
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| Q |
356 |
ttcgatgctttttctttcttctcact |
381 |
Q |
| |
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||||||||||||| ||| ||||||| |
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| T |
48532636 |
ttcgatgcttttttcttcgtctcact |
48532661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 56 - 381
Target Start/End: Original strand, 17049493 - 17049817
Alignment:
| Q |
56 |
gtgcgtttgttttgttaaaatttaagggactggacaggacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaaggacaacacaaaataaataa |
155 |
Q |
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|||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17049493 |
gtgcgtttgttttgttcaaatttaaggcactggacaaaacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaaggacagcacaaaataaataa |
17049592 |
T |
|
| Q |
156 |
tcaaggacaggacaagtaaccacttttttgtccaccactttagtgggggacaactttttgtccagcggattactaacccaaaaagacgtttttatccttt |
255 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17049593 |
tcaaggacaagacaagtaaccacttttttgtccaccactttagttggggacaactttttgtccagcggattactaacccaaaaagacgtttttatccttt |
17049692 |
T |
|
| Q |
256 |
ggatcttaggttttctcgctatctcacttcttcacaacactgttcacgtccttcctgctaacttagactgcggctgcttctctatttgtcaggtaacaat |
355 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
17049693 |
ggatcttaggttttctcgctgtctcacttcttcacaaaactgttcacatccttcctgctaaatt-gactgcggctgcttctctatttgtcaggtaacaat |
17049791 |
T |
|
| Q |
356 |
ttcgatgctttttctttcttctcact |
381 |
Q |
| |
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||||||||||||| ||| ||||||| |
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| T |
17049792 |
ttcgatgcttttttcttcgtctcact |
17049817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0430 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 56 - 381
Target Start/End: Complemental strand, 754 - 430
Alignment:
| Q |
56 |
gtgcgtttgttttgttaaaatttaagggactggacaggacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaaggacaacacaaaataaataa |
155 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
754 |
gtgcatttgttttgttaaaatttaagggagtggataggacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaaggacagcacaaaataaataa |
655 |
T |
|
| Q |
156 |
tcaaggacaggacaagtaaccacttttttgtccaccactttagtgggggacaactttttgtccagcggattactaacccaaaaagacgtttttatccttt |
255 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
654 |
tcaaggatgggacaagtaaccacttttttgtccaccactttagttggggacaactttttgtccagcggattactaacccaaaaagacgtttttatccttt |
555 |
T |
|
| Q |
256 |
ggatcttaggttttctcgctatctcacttcttcacaacactgttcacgtccttcctgctaacttagactgcggctgcttctctatttgtcaggtaacaat |
355 |
Q |
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|||||||||||||||||| | ||| |||||||||||| |||||||||||| |||||||||| || ||||||||| ||||||||||||||||||||||||| |
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|
| T |
554 |
ggatcttaggttttctcgttgtctgacttcttcacaaaactgttcacgtctttcctgctaaatt-gactgcggcagcttctctatttgtcaggtaacaat |
456 |
T |
|
| Q |
356 |
ttcgatgctttttctttcttctcact |
381 |
Q |
| |
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||||||||||||| ||| ||||||| |
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| T |
455 |
ttcgatgcttttttcttcgtctcact |
430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 98 - 304
Target Start/End: Complemental strand, 39377132 - 39376927
Alignment:
| Q |
98 |
aaatatttgtaccgcgtttgatttattaaaacgaaaaaggacaacacaaaataaataatcaaggacaggacaagtaaccacttttttgtccaccacttta |
197 |
Q |
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|
|||||||||||||||||||||||| |||| | | ||||||||||||||||||||||| ||||||| ||| ||||| || |||||||||||||||||||| |
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| T |
39377132 |
aaatatttgtaccgcgtttgatttgttaataa-agaaaggacaacacaaaataaataaccaaggactggataagtagccgcttttttgtccaccacttta |
39377034 |
T |
|
| Q |
198 |
gtgggggacaactttttgtccagcggattactaacccaaaaagacgtttttatcctttggatcttaggttttctcgctatctcacttcttcacaacactg |
297 |
Q |
| |
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|| ||||||||||||| |||||| ||||||||| ||||| ||||||||||||||| ||| || |||||||| || ||||||| ||| || |||| |
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| T |
39377033 |
gttggggacaacttttaatccagcagattactaaattaaaaatacgtttttatcctttagataatatgttttctcacttcctcactttgtcataatactg |
39376934 |
T |
|
| Q |
298 |
ttcacgt |
304 |
Q |
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||||||| |
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| T |
39376933 |
ttcacgt |
39376927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 78 - 250
Target Start/End: Original strand, 39534101 - 39534272
Alignment:
| Q |
78 |
taagggactggacaggacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaaggacaacacaaaataaataatcaaggacaggacaagtaacca |
177 |
Q |
| |
|
||||||| ||||| | |||||| |||||||| |||||||||||| || ||| ||||| ||| |||||||||||||| ||| ||| ||||||||| || |
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| T |
39534101 |
taagggattggaccgaacaaaagtatttgtaacgcgtttgatttgtttaaaa-aaaaatgacggcacaaaataaataaccaaagacgggacaagtagccg |
39534199 |
T |
|
| Q |
178 |
cttttttgtccaccactttagtgggggacaactttttgtccagcggattactaacccaaaaagacgtttttat |
250 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| || |||||||| ||||| |||||||||| |
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|
| T |
39534200 |
cttttttgtccaccactttagttggggacaactttttgtccaacgaattactaaattaaaaatacgtttttat |
39534272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 61 - 219
Target Start/End: Complemental strand, 16437248 - 16437096
Alignment:
| Q |
61 |
tttgttttgttaaaatttaagggactggacaggacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaaggacaacacaaaataaataatcaag |
160 |
Q |
| |
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|||| |||||||||| |||||||||||||||||||||||||| ||||| || |||||||||| ||||| |||||||||| ||||||| || ||| |
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| T |
16437248 |
tttgatttgttaaaaaataagggactggacaggacaaaaatatctgtactgcctttgatttataaaaacaaaaaaggacagcacaaaagaagtaa----- |
16437154 |
T |
|
| Q |
161 |
gacaggacaagtaaccacttttttgtccaccactttagtgggggacaactttttgtcca |
219 |
Q |
| |
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|||||||||| || || ||||||||| || | ||||| ||||||||||||||||||| |
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|
| T |
16437153 |
gacaggacaactatccgcttttttgttca-tgcattagttggggacaactttttgtcca |
16437096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 6625034 - 6625087
Alignment:
| Q |
56 |
gtgcgtttgttttgttaaaatttaagggactggacaggacaaaaatatttgtac |
109 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6625034 |
gtgcgtttgatttgttaaaatataagggactggacaggacaaaaatatttgtac |
6625087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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