View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_high_21 (Length: 372)
Name: NF11646_high_21
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 3101708 - 3101365
Alignment:
| Q |
18 |
agataatcacataattaattttcatttaagnnnnnnntcattttgcctctttaaaaaattgaataatatatatttgattttatatgggttgccaatatat |
117 |
Q |
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| T |
3101708 |
agataatcacataattaattttcatttaagaaaaaaatcattttgcctctttaaaaaattgaataatatatatttgattttatatgggttgccaatatat |
3101609 |
T |
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| Q |
118 |
gaacttccttaaaatatcaaatagaagatttattcactaagcttgtagtcctaattaatcactactattatctttgcatttgtttatatcaaaaaataat |
217 |
Q |
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| T |
3101608 |
gaacttccttaaaatatcaaatagaa-atttattcactaagcttgtagtcctaattaatcactattattatctttgcatttgtttatatcaaaaaataat |
3101510 |
T |
|
| Q |
218 |
aatcttttcaattcccttcctaattacaaaatgctaatagtcaaaagagaaacaaatgaaaataaaaaaccatagt--tgtactccatgtttcagtttgt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| | |||||| ||||||| ||||| |
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| T |
3101509 |
aatcttttcaattcccttcctaattacaaaatgctaatagtcaatagagaaacaaatgaaagtaaagaaccatagttctatactccttgtttcattttgt |
3101410 |
T |
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| Q |
316 |
ttgattgcttttcctacttgacttagtatgcgacccaacaacctttg |
362 |
Q |
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||||||||||||| ||||||| |||| ||||||| ||||||||||| |
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| T |
3101409 |
ttgattgcttttcgtacttgatttag--tgcgaccaaacaacctttg |
3101365 |
T |
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