View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_high_23 (Length: 368)
Name: NF11646_high_23
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 102 - 352
Target Start/End: Complemental strand, 34320108 - 34319858
Alignment:
| Q |
102 |
ggaatccttctgtgtgatgactggctattggttatatctttaatccaattatcagaatatgctgacgacaatgactttggtgtgctttgactgcatttaa |
201 |
Q |
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| T |
34320108 |
ggaatccttctgtgtgatgactggctattggttagatctttaatccaattatcagaatatgctgacgacaatgactttggtgtactttgactgcatttaa |
34320009 |
T |
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| Q |
202 |
tcaaaatcattgatccatattgtttacacttaaaatgctttacagaatctcaatcactggaccgatattagaatgtttcatatgttattgttttctttct |
301 |
Q |
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| T |
34320008 |
tcaaaatcattgatccatattgtttacacttaaaatgctttacagaatctcaatcaccggaccgatattagaatgtttcatatgttattgttttctttct |
34319909 |
T |
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| Q |
302 |
gttacaaattacaactctcttatcgagtatatatttagaataaacactaac |
352 |
Q |
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| T |
34319908 |
gttacaaattacaactctcttatcgagtatatatttagaataaacactaac |
34319858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 34320206 - 34320137
Alignment:
| Q |
4 |
tgacatgcacaaagactttgatcttttcatttcatatctttacagtttgaccaaccttccaattttgtga |
73 |
Q |
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| T |
34320206 |
tgacatgcacaaagactttgatcttttcatttcatatctttacagtttgaccaaccttccaattttgtga |
34320137 |
T |
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