View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_high_24 (Length: 362)
Name: NF11646_high_24
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 351
Target Start/End: Complemental strand, 5451932 - 5451594
Alignment:
| Q |
16 |
aattgtttccttggttgagtagtataaataggtttcacaattttcatcaaccatctctccnnnnnnnnnnnnnnnntcatcaaccaatcaagtaaaaagt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5451932 |
aattgtttccttggttgagtagtataaataggtttcacaattttcatcaaccatctctccaaaaaaaaaaat----tcatcaaccaatcaagtaaaaagt |
5451837 |
T |
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| Q |
116 |
tttc-----ctttgagcatattgagagagttttctgaactgatttccaactcatatgtactcactctatggcaaccaaaagtatagtactagtagtagca |
210 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5451836 |
tttcttttcctttgagcatattgagagagttttctgagctgatttccaactcatatgtactcactctatggcaaccaaaagtatagtactagtagtagca |
5451737 |
T |
|
| Q |
211 |
attttgcatacgttattgagtgttagcaacactaactagatagtagctacatcaagag--ttcagtaaagcatagcactatttagttgtacttgaatttc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5451736 |
attttgcatacgttattgagtgttagcaacactaactagatagtagctacatcaagagaattcagtaaagcatagcactatttagttgtacttgaatttc |
5451637 |
T |
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| Q |
309 |
ttttactttcgttctctttttgtcactctatctattctttcat |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5451636 |
ttttactttcgttctctttttgtcactctatctattctttcat |
5451594 |
T |
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