View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_high_25 (Length: 345)
Name: NF11646_high_25
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 27318486 - 27318160
Alignment:
| Q |
11 |
atgaattaatggtatagttgtatttgtacttaccatatccaagtaggatagaagtcatagaagccaagatagcacaagcacaagcaaacttgttcctttt |
110 |
Q |
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| T |
27318486 |
atgaattaatggtatagttgtatttgtacttaccatatccaagtaggatagaagtcatagaagccaagatagcacaagcacaagcaaacttgttcctttt |
27318387 |
T |
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| Q |
111 |
gagcttcttttgaggaccaaaatcctcaagagatttcagaactattgcttctccctcagccatttttgtttggtgaggatgatgtttagattttg----- |
205 |
Q |
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| T |
27318386 |
gagctttttttgaggaccaaaatcttcaagagatttcagaactgttgcttctccctcagccatttttgtttggtgaggatgatgtttagattttggctaa |
27318287 |
T |
|
| Q |
206 |
---gctactacactagtcttatctgattatgaatacacatgattggaattattgaagcacgtttctgttttcagcctcacaaacatacatagctagtctt |
302 |
Q |
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| T |
27318286 |
ttggctactacactagtcttatctgattatgaatacacatgattggaattattgaagcacgtttctgttttcagcctcacaaacatacatagctagtctt |
27318187 |
T |
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| Q |
303 |
caatgttgactaaaatgagcaataatt |
329 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
27318186 |
caatgttgactaaaatcagcaataatt |
27318160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 26152338 - 26152244
Alignment:
| Q |
40 |
ttaccatatccaagtaggatagaagtcatagaagccaagatagcacaagcacaagcaaacttgttccttttgagcttcttttgaggaccaaaatc |
134 |
Q |
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| T |
26152338 |
ttaccatatccaagcaaaatggaagtcatggaagccaacatagcacaagcaaaagcatacttatttctcttaggcttcttttgtggatcaaaatc |
26152244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 26152478 - 26152408
Alignment:
| Q |
40 |
ttaccatatccaagtaggatagaagtcatagaagccaagatagcacaagcacaagcaaacttgttcctttt |
110 |
Q |
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|||||||||||||| | || |||||||| |||||||| |||||||||||| ||||| ||||||| ||||| |
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| T |
26152478 |
ttaccatatccaagcaaaatggaagtcatggaagccaacatagcacaagcaaaagcatacttgtttctttt |
26152408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 149
Target Start/End: Complemental strand, 54347889 - 54347777
Alignment:
| Q |
37 |
tacttaccatatccaagtaggatagaagtcatagaagccaagatagcacaagcacaagcaaacttgttccttttgagcttcttttgaggaccaaaatcct |
136 |
Q |
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| T |
54347889 |
tacttaccataaccaagtaaaatggaagtcatggaagccaatatagcacaggcgaaagcaaacttgttcgattcgggtttcttttgagaatcaaaatcct |
54347790 |
T |
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| Q |
137 |
caagagatttcag |
149 |
Q |
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| T |
54347789 |
caagagacttcag |
54347777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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