View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_high_31 (Length: 307)
Name: NF11646_high_31
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 53901952 - 53901661
Alignment:
| Q |
1 |
gttttacctttgattccaggtcataggattgcaatgtcagaatgtgattgtgaatctagaagagatttcaaatttgcaagctttgattcagccagagctg |
100 |
Q |
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| T |
53901952 |
gttttacctttgattccaggtcataggattgcaatgtcagaatgtgattgtgaatctagaagagatttcaaatttgcaagctttgattcagccagagctg |
53901853 |
T |
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| Q |
101 |
aggatgttgttaaaggtagtactagtgagggtgctggtattggaaggagtagaaaggagagtttttctatatcaaagatttggcttagaggnnnnnnnga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
53901852 |
aggatgttgttaaaggtagtactagtgagggtgctggtattggaaggagtagaaaggagagtttttctatatcaaagatttggcttagaggaaaaaaaga |
53901753 |
T |
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| Q |
201 |
taagaaaaatggtgatgtaactgattcatctagaagagctgtttcatttaggtttccattacaaagcaatgttggtagtggtaatgatgatt |
292 |
Q |
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| T |
53901752 |
taagaaaaatggtgatgtaactgattcatctagaagagctgtttcatttaggtttccattacaaagcaatgttggtagtggtaatgatgatt |
53901661 |
T |
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Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 3958531 - 3958822
Alignment:
| Q |
1 |
gttttacctttgattccaggtcataggattgcaatgtcagaatgtgattgtgaatctagaagagatttcaaatttgcaagctttgattcagccagagctg |
100 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
3958531 |
gttttgcctttgattccaggtcacaggattgcaatgtcagaatgtgattgtgaatctagaagagatttcaaatttgcaagcttttattcagctagagctg |
3958630 |
T |
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| Q |
101 |
aggatgttgttaaaggtagtactagtgagggtgctggtattggaaggagtagaaaggagagtttttctatatcaaagatttggcttagaggnnnnnnnga |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| || |
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| T |
3958631 |
aggatgttgttaaaggtattactagtgagggtgctggtattggaaggagaagaaaggagagtttttctatatcaaagattaggctcagagggaaaaaaga |
3958730 |
T |
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| Q |
201 |
taagaaaaatggtgatgtaactgattcatctagaagagctgtttcatttaggtttccattacaaagcaatgttggtagtggtaatgatgatt |
292 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3958731 |
taagaaaaatggtgatgtggctgattcatctagaagggctgtttcattcaggtttccattacaaagcaatgttggtagtggtaatgatgatt |
3958822 |
T |
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