View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11646_high_33 (Length: 297)

Name: NF11646_high_33
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11646_high_33
NF11646_high_33
[»] chr3 (1 HSPs)
chr3 (1-283)||(46196825-46197110)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 46196825 - 46197110
Alignment:
Q  1 tatttccgttccttttcctttttcctccgtttcttcttattagaggaaattaagctgagcagctcgaatccaacacaacactccatcattgtgctaactt 100  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||     ||||||||||| |||| ||||    
T  46196825 tatttccgttccttttcctttttcctccttttcttcctattagaggaaattaagctgagcagctcgaatccaac-----actccatcattttgcttactt 46196919  T
Q  101 ggtctaatttgttccatgtttaaagaacatcacttcactttcccaaaacatacatgcaaaactcctgtgtaataaaacctagtgagttatcaagtgcaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46196920 ggtctaatttgttccatgtttaaagaacatcacttcactttcccaaaacatacatgcaaaactcctgtgtaataaaacctagtgagttatcaagtgcaca 46197019  T
Q  201 tcacgtattatatatgtagaatatgatcttttg-aagctcatatttta-----------tcttaccaactatcttattatatctatctttttcat 283  Q
    ||||||||    ||||||||||||||||||||| |||||||||||| |           ||||||||||||||||||||||||||||||||||||    
T  46197020 tcacgtat----tatgtagaatatgatcttttgaaagctcatatttaattttatcctactcttaccaactatcttattatatctatctttttcat 46197110  T

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