View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_high_38 (Length: 258)
Name: NF11646_high_38
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_high_38 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 7367100 - 7366853
Alignment:
| Q |
11 |
cacagatcgcaaaaaataccattttgttaaaattccgctccactattaaggtatatatagtaccacaatagtcacgctatttaacaacactttatgctaa |
110 |
Q |
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| T |
7367100 |
cacaggtcgcaaaaaataccattttgttaaaattccgctacgctattaaggtatatatagtaccacaacagtcacgctatttaacaacactttgtgctaa |
7367001 |
T |
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| Q |
111 |
tagtgtatcgtcaaacaatttcaatttgttcgaattccgctaagctattagacaaaataacacacatagtatcaaaaaaccagaataaaagcacaatctc |
210 |
Q |
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| T |
7367000 |
tagtgtatcgtcaaacaatttcaatttgtccgaattccgctaagctattagacaaaataacacacatagtatcaaaaaaccagaataaaagcacaatctc |
7366901 |
T |
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| Q |
211 |
tacatgcaagtggacggttggattggtccctcagattaatcggtcttt |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7366900 |
tacatgcaagtggacggttggattggtccctcagattaatcggtcttt |
7366853 |
T |
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