View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_high_47 (Length: 242)
Name: NF11646_high_47
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6942856 - 6942634
Alignment:
| Q |
1 |
aaagatgagtagatgatgataaagnnnnnnnttcaaagttcaaagagggtaaagactgggaaatgagcataaggaacaatggtatcatagtttgttgcgt |
100 |
Q |
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| T |
6942856 |
aaagatgagtagatgatgataaagaaaaaaattcaaagttcaaagagggtaaagactgggaaatgagcataaggaacaatggtatcatagtttgttgcat |
6942757 |
T |
|
| Q |
101 |
gatggcgactgggggtacggttcagggttgatgttgtaatctggacaatagtttttatacacacgttgtgcattgtaaacattactatttctctcataat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
6942756 |
gatggcgactgggggtacggttcagggttgatgttgtaatctggacaatagtgtttatacacaagttgtgcattgtaaacattactctttctctcataat |
6942657 |
T |
|
| Q |
201 |
aaaaaggaactgcagctgctctg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
6942656 |
aaaaaggaactgcagctgctctg |
6942634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 6939677 - 6939459
Alignment:
| Q |
5 |
atgagtagatgatgataaagnnnnnnnttcaaagttcaaagagggtaaagactgggaaatgagcataaggaacaatggtatcatagtttgttgcgtgatg |
104 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6939677 |
atgagtagatgatgataaagaaaaaaattcaaagttcaaagagggtaaagactgggaatggagcataaggaacaatggtatcatagtttgttgcgtgatg |
6939578 |
T |
|
| Q |
105 |
gcgactgggggtacggttcagggttgatgttgtaatctggacaatagtttttatacacacgttgtgcattgtaaacattactatttctctcataataaaa |
204 |
Q |
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| T |
6939577 |
gcgactgggggtacggttcacggttgatgttgtaatctggacaatagtttttatacacacgttgtgcattgtaaacattactctttctctcataataaaa |
6939478 |
T |
|
| Q |
205 |
aggaactgcagctgctctg |
223 |
Q |
| |
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||||||||||||||||||| |
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| T |
6939477 |
aggaactgcagctgctctg |
6939459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 6787945 - 6788089
Alignment:
| Q |
83 |
tatcatagtttgttgcgtgatggcgactgggggtacggttcagggttgatgttgtaatctggacaatagttt----ttatacacacgttgtgcattgtaa |
178 |
Q |
| |
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||||||||||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||| |
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| T |
6787945 |
tatcatagtttgttgtgtaatggcgactgggggtatggttcaggggtgatgttgtaatctggacaatagtgtttaattatacacaagttgtgcattgtaa |
6788044 |
T |
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| Q |
179 |
acattactatttctctcataataaaaaggaactgcagctgctctg |
223 |
Q |
| |
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|| ||| | |||| ||||||||||||||||||||||||| ||||| |
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| T |
6788045 |
accttaatctttcactcataataaaaaggaactgcagcttctctg |
6788089 |
T |
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