View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_high_49 (Length: 240)
Name: NF11646_high_49
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_high_49 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 14221488 - 14221712
Alignment:
| Q |
18 |
ctatatatgtta-cctaaggacgtgcttattttggtttgcttcaggacaatgagtaacatgaagaggaaagacattgtagataaaggaggtgtaagacca |
116 |
Q |
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| T |
14221488 |
ctatatatgttaacctaaggacgtgcttattttggtttgcttcaggacaatgagtaacatgaagaggaaagacattgtagataaaggaggtgtaagacca |
14221587 |
T |
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| Q |
117 |
aaggctgaatgggatgtcaatacagtcaaattgtatatcaaattatgccttgatgaaatc-aaaaagggagaacgcaatggaacaacccttacaaagaaa |
215 |
Q |
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| T |
14221588 |
aaggctgaatgggatgtcaatacagtcaaattgtatatcaaattatgccttgatgaaatcaaaaaagggagaacgcaatggaacaacccttacaaagaaa |
14221687 |
T |
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| Q |
216 |
ggctggaaatctgttttatctaact |
240 |
Q |
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||||||||||||||||||||||||| |
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| T |
14221688 |
ggctggaaatctgttttatctaact |
14221712 |
T |
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