View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_high_55 (Length: 220)
Name: NF11646_high_55
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_high_55 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 11359947 - 11360139
Alignment:
| Q |
15 |
ataggcaaagtgaatgaagccatggaacttaaaagagtcgtgagtgatataaagcacgaggtgcaatcacaactcgtacagaatgaaaaaactcgcaaac |
114 |
Q |
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| T |
11359947 |
ataggcaaagtgaatgaagccatggaacttaaaagagtcgtgagtgatataaagcacgaggtgcaatcacaactcgtacagaatgaaaaaactcgcaaac |
11360046 |
T |
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| Q |
115 |
gggtttctggtatagctaaagaattgaggaaaattcatagggaagcaatccaaaacaccataaattctgtcacagtagttgctgtcctttttg |
207 |
Q |
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| T |
11360047 |
gggtttctggtatagctaaagaattgaggaaaattcatagggaagcaatccaaaacaccataaattctgtcacagtagttgctgtcctttttg |
11360139 |
T |
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Target: chr8 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 28 - 207
Target Start/End: Original strand, 44399119 - 44399298
Alignment:
| Q |
28 |
atgaagccatggaacttaaaagagtcgtgagtgatataaagcacgaggtgcaatcacaactcgtacagaatgaaaaaactcgcaaacgggtttctggtat |
127 |
Q |
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| T |
44399119 |
atgaagccatggaacttaaacgaacagtgagtgatataaagcatgaggtgcagtcacagctcatacaaaacgaaaaaactcgccgacgagtttccggtat |
44399218 |
T |
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| Q |
128 |
agctaaagaattgaggaaaattcatagggaagcaatccaaaacaccataaattctgtcacagtagttgctgtcctttttg |
207 |
Q |
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|||||| ||||||| ||| | ||||| ||||| | ||||||||||| || ||||||||||| |||||||| ||||||| |
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| T |
44399219 |
agctaaggaattgaaaaaactccatagagaagccgttcaaaacaccattaactctgtcacagtggttgctgttctttttg |
44399298 |
T |
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