View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11646_low_11 (Length: 472)

Name: NF11646_low_11
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11646_low_11
NF11646_low_11
[»] chr4 (29 HSPs)
chr4 (88-254)||(54782456-54782622)
chr4 (278-456)||(54782286-54782464)
chr4 (289-453)||(54789344-54789502)
chr4 (20-77)||(4209561-4209618)
chr4 (20-77)||(4264336-4264393)
chr4 (20-77)||(18359975-18360032)
chr4 (20-77)||(36602896-36602953)
chr4 (20-69)||(39786367-39786416)
chr4 (20-79)||(5123157-5123216)
chr4 (20-74)||(39260137-39260191)
chr4 (20-77)||(7738821-7738878)
chr4 (20-77)||(55190568-55190625)
chr4 (17-69)||(42187010-42187062)
chr4 (20-74)||(19652261-19652315)
chr4 (20-77)||(1377233-1377290)
chr4 (20-77)||(23603649-23603706)
chr4 (24-77)||(26205706-26205759)
chr4 (20-69)||(40250779-40250828)
chr4 (20-77)||(46212352-46212409)
chr4 (24-77)||(46803838-46803891)
chr4 (378-427)||(52282044-52282093)
chr4 (20-68)||(3443398-3443446)
chr4 (29-77)||(45198342-45198390)
chr4 (289-352)||(52281961-52282026)
chr4 (24-77)||(3442346-3442399)
chr4 (24-77)||(5735477-5735530)
chr4 (20-77)||(5744085-5744142)
chr4 (24-77)||(28152197-28152250)
chr4 (24-77)||(47579492-47579545)
[»] chr8 (19 HSPs)
chr8 (289-453)||(19295384-19295543)
chr8 (20-77)||(6471047-6471104)
chr8 (17-77)||(2986524-2986584)
chr8 (17-73)||(6470620-6470676)
chr8 (24-77)||(14522585-14522638)
chr8 (17-77)||(13138134-13138194)
chr8 (20-77)||(3293103-3293160)
chr8 (20-77)||(8350882-8350939)
chr8 (20-69)||(37710101-37710150)
chr8 (24-77)||(45082018-45082071)
chr8 (20-76)||(40013853-40013909)
chr8 (20-82)||(30380732-30380794)
chr8 (20-62)||(45253948-45253990)
chr8 (24-77)||(23249058-23249111)
chr8 (24-77)||(30290130-30290183)
chr8 (20-77)||(38845809-38845866)
chr8 (24-69)||(39361331-39361376)
chr8 (24-77)||(43066332-43066385)
chr8 (29-77)||(18809487-18809535)
[»] chr5 (26 HSPs)
chr5 (134-217)||(18108687-18108769)
chr5 (134-217)||(18113114-18113196)
chr5 (20-74)||(43517065-43517119)
chr5 (20-77)||(32334640-32334697)
chr5 (20-69)||(40512690-40512739)
chr5 (20-76)||(39036612-39036668)
chr5 (20-82)||(14475227-14475289)
chr5 (20-74)||(35290488-35290542)
chr5 (20-77)||(5212924-5212981)
chr5 (20-77)||(32002016-32002073)
chr5 (20-77)||(37843577-37843634)
chr5 (24-77)||(38698169-38698222)
chr5 (20-77)||(39894983-39895040)
chr5 (17-69)||(5364623-5364675)
chr5 (26-62)||(30779763-30779799)
chr5 (20-74)||(4924843-4924897)
chr5 (24-74)||(37516351-37516401)
chr5 (24-69)||(23988783-23988828)
chr5 (20-65)||(25563702-25563747)
chr5 (24-77)||(35447999-35448052)
chr5 (24-77)||(42148513-42148566)
chr5 (29-77)||(4299835-4299883)
chr5 (38-82)||(16954840-16954884)
chr5 (214-254)||(18108626-18108666)
chr5 (214-254)||(18113053-18113093)
chr5 (29-77)||(22613711-22613759)
[»] chr3 (23 HSPs)
chr3 (20-77)||(46483750-46483807)
chr3 (20-76)||(47638257-47638313)
chr3 (20-77)||(21907198-21907255)
chr3 (17-77)||(38833862-38833922)
chr3 (20-77)||(34827455-34827512)
chr3 (24-77)||(37833106-37833159)
chr3 (20-69)||(38492253-38492302)
chr3 (20-77)||(51062592-51062649)
chr3 (20-77)||(53066572-53066629)
chr3 (20-77)||(54840130-54840187)
chr3 (20-72)||(25097194-25097246)
chr3 (29-69)||(27849147-27849187)
chr3 (17-77)||(29728100-29728160)
chr3 (17-77)||(45167498-45167558)
chr3 (31-77)||(4238496-4238542)
chr3 (20-66)||(32285189-32285235)
chr3 (24-77)||(7459822-7459875)
chr3 (24-77)||(8559007-8559060)
chr3 (20-77)||(10571146-10571203)
chr3 (24-77)||(18659258-18659311)
chr3 (29-77)||(10435330-10435378)
chr3 (31-75)||(36665231-36665275)
chr3 (17-77)||(48706848-48706908)
[»] chr7 (16 HSPs)
chr7 (20-77)||(48531524-48531581)
chr7 (24-83)||(36859204-36859263)
chr7 (20-77)||(19072971-19073028)
chr7 (20-77)||(31466360-31466417)
chr7 (20-77)||(47713504-47713561)
chr7 (20-77)||(4612089-4612146)
chr7 (20-77)||(34478010-34478067)
chr7 (20-77)||(47538125-47538182)
chr7 (17-77)||(37950947-37951007)
chr7 (20-69)||(23473979-23474028)
chr7 (20-77)||(24151583-24151640)
chr7 (24-77)||(36819902-36819955)
chr7 (24-77)||(42834294-42834347)
chr7 (24-77)||(47081186-47081239)
chr7 (29-77)||(10464117-10464165)
chr7 (17-77)||(42086640-42086700)
[»] scaffold0007 (1 HSPs)
scaffold0007 (20-77)||(15218-15275)
[»] chr2 (21 HSPs)
chr2 (20-77)||(9877085-9877142)
chr2 (20-77)||(39418022-39418079)
chr2 (20-77)||(7442893-7442950)
chr2 (20-77)||(32775905-32775962)
chr2 (24-77)||(40425251-40425304)
chr2 (20-77)||(42038725-42038782)
chr2 (17-69)||(24282970-24283022)
chr2 (17-69)||(30708927-30708979)
chr2 (31-77)||(3987234-3987280)
chr2 (20-69)||(4046051-4046100)
chr2 (24-77)||(14707537-14707590)
chr2 (24-77)||(18718445-18718498)
chr2 (24-77)||(20517624-20517677)
chr2 (20-77)||(27559777-27559834)
chr2 (20-77)||(34827114-34827171)
chr2 (24-69)||(36198961-36199006)
chr2 (20-77)||(42020205-42020262)
chr2 (24-77)||(44283281-44283334)
chr2 (20-77)||(44330586-44330643)
chr2 (17-77)||(4045235-4045295)
chr2 (29-77)||(23671587-23671635)
[»] scaffold0051 (1 HSPs)
scaffold0051 (20-77)||(41219-41276)
[»] chr6 (11 HSPs)
chr6 (17-82)||(11114764-11114829)
chr6 (20-77)||(16696018-16696075)
chr6 (20-69)||(18992105-18992154)
chr6 (20-69)||(25435613-25435662)
chr6 (20-69)||(30237369-30237418)
chr6 (20-77)||(31855020-31855077)
chr6 (20-77)||(643433-643490)
chr6 (20-77)||(8796251-8796308)
chr6 (24-77)||(20662061-20662114)
chr6 (20-77)||(22020478-22020535)
chr6 (29-77)||(25163375-25163423)
[»] chr1 (19 HSPs)
chr1 (20-77)||(4605201-4605258)
chr1 (24-77)||(25531984-25532037)
chr1 (24-77)||(30529052-30529105)
chr1 (20-77)||(37281294-37281351)
chr1 (20-77)||(41501609-41501666)
chr1 (20-77)||(45234851-45234908)
chr1 (20-77)||(50539462-50539519)
chr1 (17-77)||(32988351-32988411)
chr1 (24-82)||(48219639-48219697)
chr1 (20-69)||(1849903-1849952)
chr1 (20-77)||(38458932-38458989)
chr1 (24-77)||(48264813-48264866)
chr1 (24-77)||(50876570-50876623)
chr1 (29-77)||(3898573-3898621)
chr1 (29-77)||(16265244-16265292)
chr1 (29-77)||(16266373-16266421)
chr1 (29-77)||(26441845-26441893)
chr1 (17-77)||(39354266-39354326)
chr1 (29-77)||(43680281-43680329)
[»] scaffold0340 (1 HSPs)
scaffold0340 (24-62)||(14544-14582)
[»] scaffold0459 (1 HSPs)
scaffold0459 (20-69)||(12954-13003)
[»] scaffold0366 (2 HSPs)
scaffold0366 (20-69)||(10595-10644)
scaffold0366 (20-69)||(14261-14310)
[»] scaffold0604 (1 HSPs)
scaffold0604 (29-77)||(1319-1367)


Alignment Details
Target: chr4 (Bit Score: 143; Significance: 6e-75; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 88 - 254
Target Start/End: Complemental strand, 54782622 - 54782456
Alignment:
Q  88 tactaattgcatcacagtacttcttaattgctagacaatcacttggtaattgtgatagaatcacttagtattccacaaagttcaggtcataattctagga 187  Q
    ||||||||| |||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  54782622 tactaattgtatcatagtacttcctaattgctagacaatcacttagtaattgtgatagaatcacttagtattccaccaagttcaggtcataattctagga 54782523  T
Q  188 gctttttatacctataaatacctttgtatatatcacaaactcttcattctcatatcctttatttttc 254  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  54782522 gctttttatacctataaatacctttgtatatatcataaactcttcattctcatatcctttatttttc 54782456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 278 - 456
Target Start/End: Complemental strand, 54782464 - 54782286
Alignment:
Q  278 ttatttttctttctagtaaccacctcaaagtaaaaatctatctctgtctctccattttgttcttctctgagcttacgtagnnnnnnnnnnnnnnnnnnnc 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   |    
T  54782464 ttatttttctttctagtaaccacctcaaagtaaaaatctatctctgtctctccattttgttcttctctgagcttacgtagtttttgttttcgtttttttc 54782365  T
Q  378 ttctattgtagaattgcatgtattatttgatacttttgttgctgattttcctaatttacaacctaatttaggtcatatt 456  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  54782364 ttctattgtagaattgcatgtattatttgatacgtttgttgctgattttcctaatttacaacctaatttaggtcatatt 54782286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 289 - 453
Target Start/End: Original strand, 54789344 - 54789502
Alignment:
Q  289 tctagtaaccacctcaaagtaaaaatctatctctgtctctccattttgttcttctctgagcttacgtagnnnnnnnnnnnnnnnnnnncttctattgtag 388  Q
    |||||||||||||||||||||||||||| |||||      |||||||||||||||||||||||||||||                   |||||||  |||    
T  54789344 tctagtaaccacctcaaagtaaaaatctctctct------ccattttgttcttctctgagcttacgtagtttttgttttcgttttctccttctatcatag 54789437  T
Q  389 aattgcatgtattatttgatacttttgttgctgattttcctaatttacaacctaatttaggtcat 453  Q
    ||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||    
T  54789438 aattgcatgtattatgtgatacgtttgttgctgattttcttaatttacaacctaatttagctcat 54789502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 4209561 - 4209618
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||    
T  4209561 tatgtcaaatcaataatgtatattgtcaactaggtcatctattaagggacggagggag 4209618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 4264336 - 4264393
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||    
T  4264336 tatgtcaagtcaataatgtatattgtcaactaagtcatttattaagggacggagggag 4264393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 18360032 - 18359975
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||    
T  18360032 tatgtcaagtcaataatgtatattgtcaactaggtcatctattaagggacggagggag 18359975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 36602896 - 36602953
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||    
T  36602896 tatgtcaagtcaataatgtatattgtcaactaggtcatctattaagggacggagggag 36602953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 39786416 - 39786367
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  39786416 tatgtcaaatcaataatatatattgtcaactaagtcatctattaagggac 39786367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 5123216 - 5123157
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggagaa 79  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||| ||||    
T  5123216 tatgtcaagtcaataatgtatattgtcaactaggtcatctattaagggacggaggaagaa 5123157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 39260191 - 39260137
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagg 74  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  39260191 tatgtcaagtcaataatgtatattgtcaactaggtcatctattaagggacggagg 39260137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 7738878 - 7738821
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||| ||||| ||||||||||| |||||||    
T  7738878 tatgtcaagtcaataatgtatattgtcaactaggtcatttattaagggacggagggag 7738821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 55190625 - 55190568
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||| || |||||||||||||| |||||||    
T  55190625 tatgtcaagtcaataatgtatattgtcaactaggttatctattaagggacggagggag 55190568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 42187062 - 42187010
Alignment:
Q  17 aaatatgtcaaatcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||||||| ||||    
T  42187062 aaatatgtcaagtcaataatgtatattgtcaactaggtcatctattaaaggac 42187010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 19652315 - 19652261
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagg 74  Q
    |||||||| ||||||||||||||||| |||||  |||||||||||||||| ||||    
T  19652315 tatgtcaagtcaataatgtatattgtcaactagatcatctattaagggacggagg 19652261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 1377233 - 1377290
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||   |||| |||||||||||||||||||    
T  1377233 tatgtcaagtcaataatgtatattgtcaactggatcatttattaagggacagagggag 1377290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 23603706 - 23603649
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||| |||||||||| ||| || |||||||    
T  23603706 tatgtcaagtcaataatgtatattgtcaactaggtcatctattgaggaacggagggag 23603649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 26205759 - 26205706
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||||||||| ||||||||||| |||||||    
T  26205759 tcaagtcaataatgcatattgtcaactaagtcatttattaagggacggagggag 26205706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 40250779 - 40250828
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||| |||||    
T  40250779 tatgtcaagtcaataatgtatattgtcaactatgtcatctattatgggac 40250828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 46212409 - 46212352
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| |||| |||||| ||||||||||  |||||||    
T  46212409 tatgtcaagtcaataatgtatattgtcaactgagtcatttattaagggatggagggag 46212352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 46803838 - 46803891
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||| ||||| |||||||||||||||||||    
T  46803838 tcaagtcaataatgcatattgtcaactaggtcatttattaagggacagagggag 46803891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 427
Target Start/End: Original strand, 52282044 - 52282093
Alignment:
Q  378 ttctattgtagaattgcatgtattatttgatacttttgttgctgattttc 427  Q
    ||||| |||||||||||||||||||| |||||||||||||  ||||||||    
T  52282044 ttctactgtagaattgcatgtattatgtgatacttttgttagtgattttc 52282093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 3443446 - 3443398
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaaggga 68  Q
    |||||||| ||||||||||||||||| ||||| ||||| ||||||||||    
T  3443446 tatgtcaagtcaataatgtatattgtcaactaggtcatttattaaggga 3443398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 45198390 - 45198342
Alignment:
Q  29 tcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||||||||||| ||||| ||||| ||||||||||| |||||||    
T  45198390 tcaataatgtatattgtcaactaggtcatttattaagggacggagggag 45198342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 352
Target Start/End: Original strand, 52281961 - 52282026
Alignment:
Q  289 tctagtaaccacctcaaagtaaaaatctatctctgt--ctctccattttgttcttctctgagctta 352  Q
    |||||||||||||||||||||||  ||| ||||| |  ||| |||||||||| |||||||||||||    
T  52281961 tctagtaaccacctcaaagtaaatctctctctctcttactccccattttgtttttctctgagctta 52282026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 3442399 - 3442346
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  3442399 tcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggag 3442346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 5735477 - 5735530
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  5735477 tcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggag 5735530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 5744142 - 5744085
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| |||| |||||||||||| ||||  ||||| ||||||||||| |||||||    
T  5744142 tatgtcaagtcaaaaatgtatattgtcaactgggtcatttattaagggacggagggag 5744085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 28152197 - 28152250
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  28152197 tcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggag 28152250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 47579492 - 47579545
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  47579492 tcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggag 47579545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 289 - 453
Target Start/End: Original strand, 19295384 - 19295543
Alignment:
Q  289 tctagtaaccacctcaaagtaaaaatctatctctgtctctccattttgttcttctctgagcttacgtagnnnnnnnnnnnnnnnnnnncttctattgtag 388  Q
    |||||||||||||||||||||||||   ||||||  |||||||||||||||||||||||||||||||||                   |||||||  |||    
T  19295384 tctagtaaccacctcaaagtaaaaa---atctct--ctctccattttgttcttctctgagcttacgtagtttttgttttcgttttctccttctatcatag 19295478  T
Q  389 aattgcatgtattatttgatacttttgttgctgattttcctaatttacaacctaatttaggtcat 453  Q
    ||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||    
T  19295479 aattgcatgtattatgtgatacgtttgttgctgattttcttaatttacaacctaatttagctcat 19295543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 6471047 - 6471104
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  6471047 tatgtcaagtcaataatgtatattgtcaactaggtcatctattaagggacagagggag 6471104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 2986524 - 2986584
Alignment:
Q  17 aaatatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||    
T  2986524 aaatatgtcaagtcaataatgtatattgtcaactaagtcatttattaagggacggagggag 2986584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 6470676 - 6470620
Alignment:
Q  17 aaatatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagag 73  Q
    |||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  6470676 aaatatctcaaatcaataatgtatattgtcaactaggtcatctattaagggacagag 6470620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 14522585 - 14522638
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||    
T  14522585 tcaagtcaataatgtatattgtcaactaggtcatctattaagggacggagggag 14522638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 13138194 - 13138134
Alignment:
Q  17 aaatatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||||| ||||||||||||||| | ||||| |||||||||||| |||| |||||||    
T  13138194 aaatatgtcaagtcaataatgtatattatcaactaggtcatctattaaaggacggagggag 13138134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 3293160 - 3293103
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||  ||||| ||||||||||| |||||||    
T  3293160 tatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggacggagggag 3293103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 8350939 - 8350882
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||| ||||| ||||||||||  |||||||    
T  8350939 tatgtcaagtcaataatgtatattgtcaactaggtcatttattaagggatggagggag 8350882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 37710101 - 37710150
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    |||||||| ||||||||||||||||| |||| |||||| |||||||||||    
T  37710101 tatgtcaagtcaataatgtatattgtcaactgagtcatttattaagggac 37710150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 45082018 - 45082071
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  45082018 tcaaatcaataatgcatattgtcaactaggtcatttattaagggacggagggag 45082071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 40013853 - 40013909
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagaggga 76  Q
    |||||||| ||||||||||||||||| |||| |||||| || |||||||| ||||||    
T  40013853 tatgtcaagtcaataatgtatattgtcaactgagtcatttactaagggacggaggga 40013909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 30380732 - 30380794
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggagaacta 82  Q
    |||||||| ||||||||||||||||| ||||   |||| ||||||||||| ||||||| ||||    
T  30380732 tatgtcaagtcaataatgtatattgtcaactggatcatttattaagggacggagggagtacta 30380794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 45253948 - 45253990
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctatt 62  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||    
T  45253948 tatgtcaagtcaataatgtatattgtcaactaggtcatctatt 45253990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 23249058 - 23249111
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  23249058 tcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggag 23249111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 30290130 - 30290183
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  30290130 tcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggag 30290183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 38845809 - 38845866
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| |||| |||||||||||| ||||  ||||| ||||||||||| |||||||    
T  38845809 tatgtcaagtcaacaatgtatattgtcaactgggtcatttattaagggacggagggag 38845866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 39361331 - 39361376
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    |||||||||||||| ||||||| ||||| ||||| |||||||||||    
T  39361331 tcaaatcaataatgcatattgtcaactaggtcatttattaagggac 39361376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 43066332 - 43066385
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| |||||||||||||||||  |||| ||||| ||||||||||| |||||||    
T  43066332 tcaagtcaataatgtatattgtcgactaggtcatttattaagggacggagggag 43066385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 18809487 - 18809535
Alignment:
Q  29 tcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||||||||||| ||||| ||||| |||| |||||| |||||||    
T  18809487 tcaataatgtatattgtcaactaggtcatttattgagggacggagggag 18809535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 18108769 - 18108687
Alignment:
Q  134 taattgtgatagaatcacttagtattccacaaagttcaggtcataattctaggagctttttatacctataaatacctttgtata 217  Q
    |||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| ||| ||||||||||||| ||||||||    
T  18108769 taattgtgatagaatcacttagtattccaccatgttcaggtcat-attctaggagctgtttgtacctataaatacatttgtata 18108687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 18113196 - 18113114
Alignment:
Q  134 taattgtgatagaatcacttagtattccacaaagttcaggtcataattctaggagctttttatacctataaatacctttgtata 217  Q
    |||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| ||| ||||||||||||| ||||||||    
T  18113196 taattgtgatagaatcacttagtattccaccatgttcaggtcat-attctaggagctgtttgtacctataaatacatttgtata 18113114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 43517119 - 43517065
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagg 74  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||    
T  43517119 tatgtcaagtcaataatatatattgtcaactaagtcatctattaagggacggagg 43517065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 32334697 - 32334640
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||||||||||||||||||||| ||||  ||||| ||||||||||| |||||||    
T  32334697 tatgtcaaatcaataatgtatattgtcaactgggtcatttattaagggacggagggag 32334640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 40512739 - 40512690
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||||||    
T  40512739 tatgtcaaatcaataatgtatattgtcaactgagtcatttattaagggac 40512690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 39036612 - 39036668
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagaggga 76  Q
    |||| ||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||    
T  39036612 tatgacaagtcaataatgtatattgtcaactaggtcatctattaagggacggaggga 39036668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 14475289 - 14475227
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggagaacta 82  Q
    |||||||| ||||||||||||||||| ||||| |||||||||| | |||| ||||||| ||||    
T  14475289 tatgtcaagtcaataatgtatattgtcaactaggtcatctattgaaggacggagggagtacta 14475227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 35290488 - 35290542
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagg 74  Q
    |||| ||| ||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  35290488 tatgacaagtcaataatgtatattgtcaactaggtcatctattaagggacggagg 35290542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 5212981 - 5212924
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||| ||||| ||||||| ||| |||||||    
T  5212981 tatgtcaagtcaataatgtatattgtcaactaggtcatttattaagagacggagggag 5212924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 32002073 - 32002016
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||  ||||| ||||||||||| |||||||    
T  32002073 tatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggacggagggag 32002016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 37843634 - 37843577
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| || || |||||||||| |||||| |||||||    
T  37843634 tatgtcaagtcaataatgtatattgtcaagtaggtcatctattgagggacggagggag 37843577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 38698169 - 38698222
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||||||||| ||||||||||| |||||||    
T  38698169 tcaagtcaataatgcatattgtcaactaagtcatttattaagggacggagggag 38698222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 39894983 - 39895040
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||  ||||| ||||||||||| |||||||    
T  39894983 tatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggacggagggag 39895040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 5364623 - 5364675
Alignment:
Q  17 aaatatgtcaaatcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    ||||||||||| ||||||||||||||||| ||||  ||||| |||||||||||    
T  5364623 aaatatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggac 5364675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 30779799 - 30779763
Alignment:
Q  26 aaatcaataatgtatattgttaactaagtcatctatt 62  Q
    |||||||||||||||||||| ||||||||||||||||    
T  30779799 aaatcaataatgtatattgtcaactaagtcatctatt 30779763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 4924897 - 4924843
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagg 74  Q
    |||||||| |||||||| |||||||| || || ||||||||||||||||| ||||    
T  4924897 tatgtcaagtcaataatatatattgtcaattaggtcatctattaagggacggagg 4924843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 37516351 - 37516401
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagg 74  Q
    |||| ||||||||||||||||| ||||| || |||||||||||||| ||||    
T  37516351 tcaagtcaataatgtatattgtcaactaggttatctattaagggacggagg 37516401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 23988783 - 23988828
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    |||| ||||||||| ||||||| ||||||||||| |||||||||||    
T  23988783 tcaagtcaataatgcatattgtcaactaagtcatttattaagggac 23988828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 25563702 - 25563747
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaag 65  Q
    ||||| |||||||||||||| ||||| ||||| |||||||||||||    
T  25563702 tatgttaaatcaataatgtacattgtcaactaggtcatctattaag 25563747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 35448052 - 35447999
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  35448052 tcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggag 35447999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 42148513 - 42148566
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  42148513 tcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggag 42148566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 4299883 - 4299835
Alignment:
Q  29 tcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||||||||||| ||||| ||||| |||| |||||| |||||||    
T  4299883 tcaataatgtatattgtcaactaggtcatttattgagggacggagggag 4299835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 16954840 - 16954884
Alignment:
Q  38 tatattgttaactaagtcatctattaagggacagagggagaacta 82  Q
    |||||||| ||||||||||||||||||| ||| ||||||| ||||    
T  16954840 tatattgtcaactaagtcatctattaagagacggagggagtacta 16954884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 18108666 - 18108626
Alignment:
Q  214 tatatatcacaaactcttcattctcatatcctttatttttc 254  Q
    ||||||||| ||||||||||||||||| ||| |||||||||    
T  18108666 tatatatcataaactcttcattctcatttcccttatttttc 18108626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 18113093 - 18113053
Alignment:
Q  214 tatatatcacaaactcttcattctcatatcctttatttttc 254  Q
    ||||||||| ||||||||||||||||| ||| |||||||||    
T  18113093 tatatatcataaactcttcattctcatttcccttatttttc 18113053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 22613759 - 22613711
Alignment:
Q  29 tcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||||||||||| ||||| ||||| |||| |||||| |||||||    
T  22613759 tcaataatgtatattgtcaactaggtcatttattgagggacggagggag 22613711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 46483750 - 46483807
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||    
T  46483750 tatgtcaaatcaataatgtatattgtcaactagatcatctattaagggacagagggag 46483807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 47638257 - 47638313
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagaggga 76  Q
    |||||||||||||||||||||||||| || || ||||||||||||||||| ||||||    
T  47638257 tatgtcaaatcaataatgtatattgtcaattaggtcatctattaagggacggaggga 47638313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 21907198 - 21907255
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| |||| |||||| ||||||||||| |||||||    
T  21907198 tatgtcaagtcaataatgtatattgtcaactgagtcatttattaagggacggagggag 21907255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 38833862 - 38833922
Alignment:
Q  17 aaatatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||||| ||||||||||||||||| ||||  ||||| ||||||||||| |||||||    
T  38833862 aaatatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggacggagggag 38833922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 34827455 - 34827512
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| |||||||| |||||||| ||||| ||||| ||||||||||| |||||||    
T  34827455 tatgtcaagtcaataatatatattgtcaactaggtcatttattaagggacggagggag 34827512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 37833106 - 37833159
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||||||||| ||||| ||||||||||| |||||||    
T  37833106 tcaagtcaataatgcatattgttaactaggtcatttattaagggacggagggag 37833159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 38492253 - 38492302
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    ||||| |||||||||||||||||||| ||||| ||||| |||||||||||    
T  38492253 tatgttaaatcaataatgtatattgtcaactaggtcatttattaagggac 38492302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 51062592 - 51062649
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||| | |||| |||||| ||||||||||| |||||||    
T  51062592 tatgtcaagtcaataatgtatattatcaactgagtcatttattaagggacggagggag 51062649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 53066572 - 53066629
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| |||||||| |||||||| |||||  |||||||||||||||| |||||||    
T  53066572 tatgtcaagtcaataatatatattgtcaactagatcatctattaagggacggagggag 53066629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 54840187 - 54840130
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||  ||||| ||||||||||| |||||||    
T  54840187 tatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggacggagggag 54840130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 25097246 - 25097194
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacaga 72  Q
    |||||||| ||||  ||||||||||| || |||||||||||||||||||||||    
T  25097246 tatgtcaagtcaaatatgtatattgtcaattaagtcatctattaagggacaga 25097194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 27849147 - 27849187
Alignment:
Q  29 tcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  27849147 tcaataatgtatattgtcaactaggtcatctattaagggac 27849187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 29728160 - 29728100
Alignment:
Q  17 aaatatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||| |||| ||||||||||||||||| |||||  |||| ||||||||||| |||||||    
T  29728160 aaatatctcaagtcaataatgtatattgtcaactagatcatttattaagggacggagggag 29728100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 45167498 - 45167558
Alignment:
Q  17 aaatatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||||| ||||||||||||||||| ||||   |||| ||||||||||| |||||||    
T  45167498 aaatatgtcaagtcaataatgtatattgtcaactggatcatatattaagggacggagggag 45167558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 4238542 - 4238496
Alignment:
Q  31 aataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||||||||| ||||||||||| |||| |||||| |||||||    
T  4238542 aataatgtatattgtcaactaagtcatttattgagggacggagggag 4238496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 32285235 - 32285189
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagg 66  Q
    |||||||| ||||||||||||||||| ||||| | ||||||||||||    
T  32285235 tatgtcaagtcaataatgtatattgtcaactaggccatctattaagg 32285189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 7459875 - 7459822
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  7459875 tcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggag 7459822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 8559060 - 8559007
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  8559060 tcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggag 8559007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 10571203 - 10571146
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||  || || ||||||||||| |||||||    
T  10571203 tatgtcaagtcaataatgtatattgtcaactgggttatttattaagggacggagggag 10571146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 18659258 - 18659311
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  18659258 tcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggag 18659311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 10435330 - 10435378
Alignment:
Q  29 tcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||||||||||| ||||| ||||| |||| |||||| |||||||    
T  10435330 tcaataatgtatattgtcaactaggtcatttattgagggacggagggag 10435378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 36665231 - 36665275
Alignment:
Q  31 aataatgtatattgttaactaagtcatctattaagggacagaggg 75  Q
    ||||||||||||||| || || ||||||||||||||||| |||||    
T  36665231 aataatgtatattgtcaaataggtcatctattaagggacggaggg 36665275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 48706908 - 48706848
Alignment:
Q  17 aaatatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||||| |||||||| |||||||| ||||   |||| ||||||||||| |||||||    
T  48706908 aaatatgtcaagtcaataatatatattgtcaactggatcatttattaagggacggagggag 48706848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 48531524 - 48531581
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||    
T  48531524 tatgtcaagtcaataatgtatattgtcaactaggtcatctattaagggacggagggag 48531581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 36859263 - 36859204
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggagaactag 83  Q
    |||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||| |||||    
T  36859263 tcaaatcaataatgcatattgtcaactaagtcatttattaagggacggagggagtactag 36859204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 19072971 - 19073028
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||||||||||||||||||||| ||||  ||||| ||||||||||| |||||||    
T  19072971 tatgtcaaatcaataatgtatattgtcaactgggtcatttattaagggacggagggag 19073028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 31466417 - 31466360
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||| ||||| ||||||||||| |||||||    
T  31466417 tatgtcaagtcaataatgtatattgtcaactaggtcatttattaagggacggagggag 31466360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 47713561 - 47713504
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||  ||||| |||||||||||||||||||    
T  47713561 tatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggacagagggag 47713504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 4612146 - 4612089
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||  ||||| ||||||||||| |||||||    
T  4612146 tatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggacggagggag 4612089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 34478067 - 34478010
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||| |||||||||||||||||||| ||||| ||||| |||| |||||| |||||||    
T  34478067 tatgttaaatcaataatgtatattgtcaactaggtcatttattgagggacggagggag 34478010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 47538125 - 47538182
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| || |||||||||||||| ||||| ||||||||||||||| | |||||||    
T  47538125 tatgtcaagtccataatgtatattgtcaactaggtcatctattaaggggcggagggag 47538182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 37951007 - 37950947
Alignment:
Q  17 aaatatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||| |||| ||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  37951007 aaatatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggag 37950947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 23474028 - 23473979
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    ||||| || ||||||||||||||||| ||||| ||||| |||||||||||    
T  23474028 tatgtaaagtcaataatgtatattgtcaactaggtcatttattaagggac 23473979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 24151640 - 24151583
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||| || ||||||||||||||||| || || |||| |||||||||||| |||||||    
T  24151640 tatgttaagtcaataatgtatattgtcaaataggtcacctattaagggacggagggag 24151583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 36819902 - 36819955
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  36819902 tcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggag 36819955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 42834347 - 42834294
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||||||||| |||||||  |||| ||||| ||||||||||| |||||||    
T  42834347 tcaaatcaataatgcatattgtcgactaggtcatttattaagggacggagggag 42834294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 47081186 - 47081239
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  47081186 tcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggag 47081239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 10464165 - 10464117
Alignment:
Q  29 tcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||||||||||| ||||| ||||| |||| |||||| |||||||    
T  10464165 tcaataatgtatattgtcaactaggtcatttattgagggacggagggag 10464117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 42086700 - 42086640
Alignment:
Q  17 aaatatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||| |||| ||||||||  ||||||| |||||| |||| ||||||||||| |||||||    
T  42086700 aaatatatcaagtcaataatacatattgtcaactaaatcatttattaagggacggagggag 42086640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 15275 - 15218
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||| ||||| ||||||||||| |||||||    
T  15275 tatgtcaagtcaataatgtatattgtcaactaggtcatttattaagggacggagggag 15218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 9877142 - 9877085
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| || || ||||||||||||||||| |||||||    
T  9877142 tatgtcaagtcaataatgtatattgtcaattaggtcatctattaagggacggagggag 9877085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 39418079 - 39418022
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| |||||||||||| |||||| ||| |||||||    
T  39418079 tatgtcaagtcaataatgtatattgtcaactaagtcatccattaagagacggagggag 39418022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 7442950 - 7442893
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| |||||  |||| ||||||||||| |||||||    
T  7442950 tatgtcaagtcaataatgtatattgtcaactagatcatttattaagggacggagggag 7442893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 32775962 - 32775905
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||  |||||||||| |||||| |||||||    
T  32775962 tatgtcaagtcaataatgtatattgtcaactgggtcatctattgagggacggagggag 32775905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 40425304 - 40425251
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  40425304 tcaaatcaataatgcatattgtcaactaggtcatttattaagggacggagggag 40425251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 42038725 - 42038782
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| |||| | |||| ||||||||||| |||||||    
T  42038725 tatgtcaagtcaataatgtatattgtcaactgaatcatttattaagggacggagggag 42038782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 24283022 - 24282970
Alignment:
Q  17 aaatatgtcaaatcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    |||||||||||||||||||| |||||||| |||||  ||||||||| ||||||    
T  24283022 aaatatgtcaaatcaataatatatattgtcaactagatcatctattgagggac 24282970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 30708927 - 30708979
Alignment:
Q  17 aaatatgtcaaatcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    |||||| |||| ||||||||||||||||| ||||| ||||| |||||||||||    
T  30708927 aaatatatcaagtcaataatgtatattgtcaactaggtcatttattaagggac 30708979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 3987280 - 3987234
Alignment:
Q  31 aataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||| ||||||| ||||||||||| ||||||||||| |||||||    
T  3987280 aataatgcatattgtcaactaagtcatttattaagggacggagggag 3987234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 4046051 - 4046100
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    |||||||||| | |||| |||||||| ||||| |||||||||||||||||    
T  4046051 tatgtcaaatgagtaatatatattgtcaactaggtcatctattaagggac 4046100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 14707590 - 14707537
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  14707590 tcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggag 14707537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 18718445 - 18718498
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  18718445 tcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggag 18718498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 20517624 - 20517677
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||||||||| |||||||| || |||||||    
T  20517624 tcaagtcaataatgcatattgtcaactaagtcatttattaaggaacggagggag 20517677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 27559777 - 27559834
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| |||| |||||||||||| ||||  ||||| ||||||||||| |||||||    
T  27559777 tatgtcaagtcaaaaatgtatattgtcaactgggtcatttattaagggacggagggag 27559834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 34827114 - 34827171
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| |||||||| |||||||| ||||  ||||| ||||||||||| |||||||    
T  34827114 tatgtcaagtcaataatatatattgtcaactgggtcatttattaagggacggagggag 34827171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 36199006 - 36198961
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    |||||||||||||| ||||||| ||||| ||||| |||||||||||    
T  36199006 tcaaatcaataatgcatattgtcaactaggtcatttattaagggac 36198961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 42020262 - 42020205
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||| |||||||||||||||||||| || || || ||||||| |||||| |||||||    
T  42020262 tatgttaaatcaataatgtatattgtcaaataggttatctattgagggacggagggag 42020205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 44283334 - 44283281
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  44283334 tcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggag 44283281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 44330586 - 44330643
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||  ||||| || |||||||| |||||||    
T  44330586 tatgtcaagtcaataatgtatattgtcaactgggtcatttaataagggacggagggag 44330643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 4045295 - 4045235
Alignment:
Q  17 aaatatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||||| |||| |||||||||||| || |  ||||| ||||||||||| |||||||    
T  4045295 aaatatgtcaagtcaacaatgtatattgtcaaatgggtcatttattaagggacggagggag 4045235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 23671587 - 23671635
Alignment:
Q  29 tcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  23671587 tcaataatgcatattgtcaactaggtcatttattaagggacggagggag 23671635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 41276 - 41219
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||| ||||||||| ||||||||||| ||||||| ||| |||||||    
T  41276 tatgtcaagtcaataacgtatattgtcaactaagtcatttattaagagacggagggag 41219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 11114764 - 11114829
Alignment:
Q  17 aaatatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggagaacta 82  Q
    ||||||||||||||||||||||||||||| ||||   |||| ||||||| ||| ||||||| ||||    
T  11114764 aaatatgtcaaatcaataatgtatattgtcaactggatcatttattaagagacggagggagtacta 11114829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 16696075 - 16696018
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||| ||||||||||| ||||| |||||||||| |||||| |||||||    
T  16696075 tatgtcaagtcaatgatgtatattgtcaactaggtcatctattgagggacggagggag 16696018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 18992105 - 18992154
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    |||||||| ||||||||||||||||| ||||| ||||| |||||||||||    
T  18992105 tatgtcaagtcaataatgtatattgtcaactaggtcatttattaagggac 18992154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 25435613 - 25435662
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    |||||||||||||||||||||||||| ||||  ||||| |||||||||||    
T  25435613 tatgtcaaatcaataatgtatattgtcaactgggtcatttattaagggac 25435662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 30237369 - 30237418
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    |||||||| ||||||||||||||||| ||||| ||||| |||||||||||    
T  30237369 tatgtcaagtcaataatgtatattgtcaactatgtcatttattaagggac 30237418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 31855020 - 31855077
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||| ||||||||| |||| |||||| ||||||||||| |||||||    
T  31855020 tatgtcaagtcaataacgtatattgtcaactgagtcatttattaagggacggagggag 31855077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 643490 - 643433
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||| ||||||||||| |||| |||||| |||| |||||| |||||||    
T  643490 tatgtcaagtcaattatgtatattgtcaactgagtcatttatttagggacggagggag 643433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 8796251 - 8796308
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||| || ||||||||||||||||| ||||  ||||| ||||||||||| |||||||    
T  8796251 tatgttaagtcaataatgtatattgtcaactgggtcatttattaagggacggagggag 8796308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 20662114 - 20662061
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  20662114 tcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggag 20662061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 22020478 - 22020535
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||  ||||| || |||||||| |||||||    
T  22020478 tatgtcaagtcaataatgtatattgtcaactgggtcatttaataagggacggagggag 22020535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 25163375 - 25163423
Alignment:
Q  29 tcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||||||||||| ||||| ||||| |||| |||||| |||||||    
T  25163375 tcaataatgtatattgtcaactatgtcatttattgagggacggagggag 25163423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 4605201 - 4605258
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||| || ||||||||||||||||| || || ||||||||||||||||| |||||||    
T  4605201 tatgtaaagtcaataatgtatattgtcaaataggtcatctattaagggacggagggag 4605258  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 25531984 - 25532037
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||||||||||| ||||| ||||| ||||||||||| |||||||    
T  25531984 tcaagtcaataatgtatattgtcaactaggtcatttattaagggacggagggag 25532037  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 30529105 - 30529052
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||||||||||| ||||| ||||| ||||||||||| |||||||    
T  30529105 tcaagtcaataatgtatattgtcaactaggtcatttattaagggacggagggag 30529052  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 37281294 - 37281351
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| |||||||| |||||||| |||||  |||||||||||||||| |||||||    
T  37281294 tatgtcaagtcaataatatatattgtcaactagatcatctattaagggacggagggag 37281351  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 41501666 - 41501609
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||| ||||||||| ||||||  |||||||    
T  41501666 tatgtcaattcaataatgtatattgtgaactaggtcatctatcaagggattgagggag 41501609  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 45234908 - 45234851
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||||| ||||||||||||||| ||||| ||||| ||||||| ||| |||||||    
T  45234908 tatgtcaaattaataatgtatattgtcaactaggtcatttattaagagacggagggag 45234851  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 50539462 - 50539519
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||| ||||||||||| |||| |||||| ||||||||||| |||||||    
T  50539462 tatgtcaagtcaattatgtatattgtcaactgagtcatttattaagggacggagggag 50539519  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 32988411 - 32988351
Alignment:
Q  17 aaatatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||||| ||||||||||||||||| ||||   |||| ||||||||||| |||||||    
T  32988411 aaatatgtcaagtcaataatgtatattgtcaactggatcatttattaagggacggagggag 32988351  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 48219697 - 48219639
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggagaacta 82  Q
    |||| ||||||||| ||||||| ||||| ||||| ||||||||||| || |||||||||    
T  48219697 tcaagtcaataatgcatattgtcaactaggtcatttattaagggacggaaggagaacta 48219639  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 1849903 - 1849952
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    |||||||| ||||||||||||||||| ||||  ||||| |||||||||||    
T  1849903 tatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggac 1849952  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 38458932 - 38458989
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||||| ||||||||||||||||| ||||  ||||| ||||||||||  |||||||    
T  38458932 tatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggatggagggag 38458989  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 48264866 - 48264813
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  48264866 tcaactcaataatgcatattgtcaactaggtcatttattaagggacggagggag 48264813  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 50876570 - 50876623
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||| ||||||||| ||||||| ||||| ||||| ||||||||||| |||||||    
T  50876570 tcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggag 50876623  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 3898621 - 3898573
Alignment:
Q  29 tcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||||||||||| ||||| ||||| |||| |||||| |||||||    
T  3898621 tcaataatgtatattgtcaactaggtcatttattgagggacggagggag 3898573  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 16265244 - 16265292
Alignment:
Q  29 tcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||||||||||| ||||| ||||| |||| |||||| |||||||    
T  16265244 tcaataatgtatattgtcaactaggtcatttattgagggacggagggag 16265292  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 16266373 - 16266421
Alignment:
Q  29 tcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||||||||||| ||||| ||||| |||| |||||| |||||||    
T  16266373 tcaataatgtatattgtcaactaggtcatttattgagggacggagggag 16266421  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 26441845 - 26441893
Alignment:
Q  29 tcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||||||||||| ||||| ||||| |||| |||||| |||||||    
T  26441845 tcaataatgtatattgtcaactaggtcatttattgagggacggagggag 26441893  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 39354326 - 39354266
Alignment:
Q  17 aaatatgtcaaatcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    |||||| |||| ||||||||| ||| ||| ||||| ||||| ||||||||||| |||||||    
T  39354326 aaatatatcaagtcaataatgcatactgtcaactaggtcatttattaagggacggagggag 39354266  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 43680281 - 43680329
Alignment:
Q  29 tcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||||||||||| ||||| ||||| |||| |||||| |||||||    
T  43680281 tcaataatgtatattgtcaactaggtcatttattgagggacggagggag 43680329  T

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Target: scaffold0340 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 14544 - 14582
Alignment:
Q  24 tcaaatcaataatgtatattgttaactaagtcatctatt 62  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  14544 tcaaatcaataatgtatattgtcaactaggtcatctatt 14582  T

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Target: scaffold0459 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 12954 - 13003
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    |||||||| ||||||||||||||||| ||||  ||||| |||||||||||    
T  12954 tatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggac 13003  T

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Target: scaffold0366 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 10595 - 10644
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    |||||||| ||||||||||||||||| ||||  ||||| |||||||||||    
T  10595 tatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggac 10644  T

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Target: scaffold0366; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 14261 - 14310
Alignment:
Q  20 tatgtcaaatcaataatgtatattgttaactaagtcatctattaagggac 69  Q
    |||||||| ||||||||||||||||| ||||  ||||| |||||||||||    
T  14261 tatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggac 14310  T

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Target: scaffold0604 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 1319 - 1367
Alignment:
Q  29 tcaataatgtatattgttaactaagtcatctattaagggacagagggag 77  Q
    ||||||||||||||||| ||||| |||||||||| | |||| |||||||    
T  1319 tcaataatgtatattgtcaactaggtcatctattgacggacggagggag 1367  T

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