View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_low_16 (Length: 462)
Name: NF11646_low_16
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 8 - 446
Target Start/End: Complemental strand, 43316058 - 43315620
Alignment:
| Q |
8 |
agagagaagaaaaaaggcatttttaactatttgagaaagagaaaatgaaatttatgattactcttaggtccacttttctggttgttttgggatattcctt |
107 |
Q |
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| T |
43316058 |
agagaaaagaaaaaaggcatttttaactatttgagaaagagaaaatgaaatttattattactcttaggtccacttttctggttgttttgggatattcctt |
43315959 |
T |
|
| Q |
108 |
gttttgtgcatatccataaaatgaattttgcactttattttgaacatgaaacaaacacggcttctgtttattaattaattttttgttgattattgttatt |
207 |
Q |
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| T |
43315958 |
gttttgtgcatatccataaaatgaattttgcactttattttgaacatgaaacaaacacggcttctgtttattaattaattttttgttgattattgttatt |
43315859 |
T |
|
| Q |
208 |
attagaaaatttctcaaagttctttccatataggatattggttgcatcccacttgtatgttcacaaattatatgtttgacatatgcattatcatatgaca |
307 |
Q |
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| T |
43315858 |
attagaaaatttctcaaagttctttccatataggatattggttgcatcccacttgtatgttcccaaattatatgtttgacatatgcattatcatatgaca |
43315759 |
T |
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| Q |
308 |
aactaactttggaagaagaaaaatgactctaatttgtatcccatctcaagactcatgagcttagtctgttataaaatgtaaatattcaacagaatatgtg |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43315758 |
aactaactttggaagaagaaaaatgactctaatttgtatcccatctcaagactcatgagcttagtctgttataaaatgtaaatcttcaacagaatatgtg |
43315659 |
T |
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| Q |
408 |
aaattttaatgtaattttctaatgtagcagtggacttac |
446 |
Q |
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| T |
43315658 |
aaattttaatgtaattttctaatgtagcagtggacttac |
43315620 |
T |
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