View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_low_18 (Length: 412)
Name: NF11646_low_18
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_low_18 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 3065369 - 3064975
Alignment:
| Q |
18 |
attttagttttgttccttaaaatcactaatcatctcaatgttttgattgatctaacggaaaaattagtgaacggtagagtacctttcccgcgcaaactta |
117 |
Q |
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| T |
3065369 |
attttagttttgttccttaaaatcactaatcatctcaatgttttgattgatctaacggaaaaattagtgaacggtagagtacctttcccgcgcaaactta |
3065270 |
T |
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| Q |
118 |
gagttttcgcacccagcacagaaaataggtaattaggccatgaagcactacatacatagcgtaattgttctagttcaactacactgaaatttgcatgtgt |
217 |
Q |
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| T |
3065269 |
gagttttcgcacccagcacagaaaataggtaattaggccatgaagcactacatacatagcgtaattgttctagttcaactacactgaaatttgcatgtgt |
3065170 |
T |
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| Q |
218 |
acaaacatgcaatgacacaaacatattcaataatcaacaatcagccactgtcactctagcaatgtgattgcatccaacttgaaccctgtaaaactataac |
317 |
Q |
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| T |
3065169 |
acaaacatgcaatgacacaaacatattcaataatcaacaatcagccactgtcactctagcaatgtgattgcatccaacttgaaccctgtaaaactataac |
3065070 |
T |
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| Q |
318 |
ctaatgtagttaaaaagtcaataacaaagagcgaggaacttgtagatatggttacctggattcgagagtgagaagttaaatttactaaattagat |
412 |
Q |
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| T |
3065069 |
ctaatgtagttaaaaagtcaataacaaagagcgaggaacttgtagatatggttacctggattcgagagtgagaagttaaatttactaaattagat |
3064975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 332
Target Start/End: Complemental strand, 3052012 - 3051950
Alignment:
| Q |
270 |
actctagcaatgtgattgcatccaacttgaaccctgtaaaactataacctaatgtagttaaaa |
332 |
Q |
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| T |
3052012 |
actctagtaatgtgattgcatcaaatttgaaccctgtaaaactataatctaagatagttaaaa |
3051950 |
T |
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