View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_low_19 (Length: 411)
Name: NF11646_low_19
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 1374321 - 1373926
Alignment:
| Q |
1 |
tgcattgaacttgacgaacgttgtcaaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaagctccttcagcacttgagaagc |
100 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1374321 |
tgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaagctccttcaacacttgagaagc |
1374222 |
T |
|
| Q |
101 |
atcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttctgc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1374221 |
atcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcatagtatcctggtgaactgtggttctcacggtacacaaatcctttctgc |
1374122 |
T |
|
| Q |
201 |
aagtaagcaagtagaagtcaaaacaaacatatgttaaccatcaaaactcaaatggattttaaataaaggtccgtgaccacaatcagggtcgcgacataac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1374121 |
aagtaagcaagtagaagtcaaaacaaacatatgttaaccatcaaaactcaaatggattttaaataaaggtccgtgaccacgatcagggtcgcgacataac |
1374022 |
T |
|
| Q |
301 |
ggtttttgatgttattgaaaccgcagttcgacagcaattgaggccacatcggccacacacaaattaaaagggttttaaatacaaatttgtgactgt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1374021 |
ggtttttgatgttattgaaaccgcagttcgacagcaattgaggccacatcggccacacacaaattaaaagggttttaaatacaaatttgtgactgt |
1373926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 1358769 - 1358565
Alignment:
| Q |
1 |
tgcattgaacttgacgaacgttgtcaaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaagctccttcagcacttgagaagc |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
1358769 |
tgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaagctccttcaacacttgagaagc |
1358670 |
T |
|
| Q |
101 |
atcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttctgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1358669 |
atcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcatagtatcctggtgaactgtggttctcacggtacacaaatcctttctgc |
1358570 |
T |
|
| Q |
201 |
aagta |
205 |
Q |
| |
|
||||| |
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|
| T |
1358569 |
aagta |
1358565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 1350863 - 1350659
Alignment:
| Q |
1 |
tgcattgaacttgacgaacgttgtcaaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaagctccttcagcacttgagaagc |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
1350863 |
tgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaagctccttcaacacttgagaagc |
1350764 |
T |
|
| Q |
101 |
atcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttctgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350763 |
atcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttctgc |
1350664 |
T |
|
| Q |
201 |
aagta |
205 |
Q |
| |
|
||||| |
|
|
| T |
1350663 |
aagta |
1350659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 1384517 - 1384313
Alignment:
| Q |
1 |
tgcattgaacttgacgaacgttgtcaaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaagctccttcagcacttgagaagc |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
1384517 |
tgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaagctccttcaacacttgagaagc |
1384418 |
T |
|
| Q |
101 |
atcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttctgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1384417 |
atcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttctgc |
1384318 |
T |
|
| Q |
201 |
aagta |
205 |
Q |
| |
|
||||| |
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|
| T |
1384317 |
aagta |
1384313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 1390622 - 1390418
Alignment:
| Q |
1 |
tgcattgaacttgacgaacgttgtcaaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaagctccttcagcacttgagaagc |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
1390622 |
tgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaagctccttcaacacttgagaagc |
1390523 |
T |
|
| Q |
101 |
atcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttctgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1390522 |
atcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttctgc |
1390423 |
T |
|
| Q |
201 |
aagta |
205 |
Q |
| |
|
||||| |
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|
| T |
1390422 |
aagta |
1390418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 1394868 - 1394664
Alignment:
| Q |
1 |
tgcattgaacttgacgaacgttgtcaaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaagctccttcagcacttgagaagc |
100 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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|
| T |
1394868 |
tgcattgaacttgacgaactttgtcgaatccgatgatacggacaaaggcattagggtaagcatcaacaacttcatcaagctccttcaacacttgagaagc |
1394769 |
T |
|
| Q |
101 |
atcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttctgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1394768 |
atcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcatagtatcctggtgaactgtggttctcacggtacacaaatcctttctgc |
1394669 |
T |
|
| Q |
201 |
aagta |
205 |
Q |
| |
|
||||| |
|
|
| T |
1394668 |
aagta |
1394664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 70 - 198
Target Start/End: Complemental strand, 7010443 - 7010315
Alignment:
| Q |
70 |
cttcatcaagctccttcagcacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaact |
169 |
Q |
| |
|
||||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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|
| T |
7010443 |
cttcagcaagctccttcaacacttgagaagaatcagtggctccaaacaaaggcaacttccacattgtccagtaacgtccatcatagtatcctggtgaact |
7010344 |
T |
|
| Q |
170 |
gtggttctcacggtacacaaatcctttct |
198 |
Q |
| |
|
||||||||||||||| ||||||||||||| |
|
|
| T |
7010343 |
gtggttctcacggtagacaaatcctttct |
7010315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 70 - 198
Target Start/End: Complemental strand, 7007365 - 7007237
Alignment:
| Q |
70 |
cttcatcaagctccttcagcacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaact |
169 |
Q |
| |
|
||||| |||||||||||| ||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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|
| T |
7007365 |
cttcagcaagctccttcaacacttgagaagaatcggtggctccgaacaaaggcaacttccacattgtccagtaacgtccatcatagtatcctggtgaact |
7007266 |
T |
|
| Q |
170 |
gtggttctcacggtacacaaatcctttct |
198 |
Q |
| |
|
||||||||||||||| ||||||||||||| |
|
|
| T |
7007265 |
gtggttctcacggtagacaaatcctttct |
7007237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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