View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_low_2 (Length: 751)
Name: NF11646_low_2
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 206 - 742
Target Start/End: Original strand, 4537186 - 4537729
Alignment:
| Q |
206 |
tatcacatgttttggtataggcagggtcaccaaggcaatgtaagacttaaaagtaacaaatcatgaagtggcaatttgttaagtaccaaaagatgagatt |
305 |
Q |
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| T |
4537186 |
tatcacatgttttggtatgggtagggtcaccaaggcaatgtaagacttaaaagtaacaaatcatgaagtggcaatttgttaagtaccaaaagatgagatt |
4537285 |
T |
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| Q |
306 |
gtaaataagggactgtccttacttttggacgatcctcg-----taggaactgtataaaaatttattt-gcttatattaatcatgattttagtatggctag |
399 |
Q |
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| T |
4537286 |
gtaaataagggattgtccttacttttggacgacccttgatttgtaggaaccgtataaaaattgattttgcttatattaatcatgattttagtatggctag |
4537385 |
T |
|
| Q |
400 |
acaatcccttcctttaagactcaagtagttgttacctttgaaataattctaattgtttgattattaagaaccaaaatttattataacttttaatctcgat |
499 |
Q |
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| T |
4537386 |
acaatccctttctttaagactcaagtagttgttacctttgaaataattctaaatgtttgattattaagaatcaaaatttattataacttttaatctcgat |
4537485 |
T |
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| Q |
500 |
tttattaaattataagtaattttgatatggattcaagaaattacgctatgttatatatcaaacttgttatatgact-aaaacattcatacataaattcat |
598 |
Q |
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| T |
4537486 |
tttattaaattataagttattttgatatggattcaagaaattacgttatgttataaatcaaacttgttatatgactgcaaacattcatacataaattcat |
4537585 |
T |
|
| Q |
599 |
ttcattctcaaactcaactttaactatcaattttacaaaacagagtttacaaaattacgattaacaaatattcgtccaataaacactaaatttcttttac |
698 |
Q |
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| T |
4537586 |
ttcattctcaaactcaactttaactatcaattttacaaaacagagtttacaaaattacgattaacaaatattcgtccaataaacactaaatttcttttac |
4537685 |
T |
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| Q |
699 |
tcaatcaccaaaatctataaactcgggtacttcccatcctatgc |
742 |
Q |
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| T |
4537686 |
tcaatcaccaaaatctatcaactcaggtacttcccatcctatgc |
4537729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 4536670 - 4536859
Alignment:
| Q |
17 |
actattaatgagtgggttcagagtcagattaagatatgttaccccaattgaattgccctcacttatgcataggcattattgtgtgatctcttgcaaacat |
116 |
Q |
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| T |
4536670 |
actattaatgagtgggttcagagtcagattaagatatgttaccccaattgaattgccctcacttatccataggcattattgtgtgatctcttgcaaacat |
4536769 |
T |
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| Q |
117 |
acggtcacaactcactactcatgtgctagaaaaaagtaggagtaacaaatcta------catttaagccttagatttggaaatattacaa |
200 |
Q |
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| T |
4536770 |
acggtcacaactcactactcatgtactagaaaaaaataggagtaacaaatgtacaaaatcatttaagccttagatttggaaatattacaa |
4536859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 624 - 674
Target Start/End: Complemental strand, 33648774 - 33648724
Alignment:
| Q |
624 |
atcaattttacaaaacagagtttacaaaattacgattaacaaatattcgtc |
674 |
Q |
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| T |
33648774 |
atcaattttacaaaacagaatttacaaaatcacgattaacaaatgttcgtc |
33648724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 252 - 451
Target Start/End: Original strand, 52084050 - 52084255
Alignment:
| Q |
252 |
ttaaaagtaacaaatcatgaagtggcaatttgttaagtaccaaaagatgagattgtaaataaggga----ctgtccttacttttggacgatcctcg--ta |
345 |
Q |
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|||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| | | |
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| T |
52084050 |
ttaagagtaacaaatcatgaagaggcaatttgttatgtaccaaaagatgagattgtaaataagggattgtctgaccttacttttggacgacccttgattt |
52084149 |
T |
|
| Q |
346 |
g--gaactgtataaaaattta-tttgcttatattaatcatgattttagtatggctagacaatcccttcctttaagactcaagtagttgttacctttgaaa |
442 |
Q |
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| T |
52084150 |
gtagaaccg--caaaaattgattttgcttatacgaatcatgattttagcatggctagacaat-cctttctttaagactcaagtcattgttacctttgaaa |
52084246 |
T |
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| Q |
443 |
taattctaa |
451 |
Q |
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||||||||| |
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| T |
52084247 |
taattctaa |
52084255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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