View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_low_21 (Length: 390)
Name: NF11646_low_21
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_low_21 |
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| [»] scaffold0971 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 54 - 384
Target Start/End: Original strand, 40551438 - 40551768
Alignment:
| Q |
54 |
gaagaacggagatgtggtgctggtgcacgtaactcaacaccttgaatatcttgggcaattgaagacctagtggtgtttattagaggtggtcttccagaga |
153 |
Q |
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| T |
40551438 |
gaagaacaaagatgtggtgttgggacacttcactcaacaccttgaatatcttgggcaattgaagacctagtggtgtttattagaggtggtcttccagaga |
40551537 |
T |
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| Q |
154 |
caccggataaagttcttgacatattgtaaccaggtggtaacatatgttgcgagttaggagcaatggagggacttggcaaactggtcgaaggaggctcacc |
253 |
Q |
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| T |
40551538 |
caccggagaaagttcttgacatattgtaaccaggtggtaacatatgttgcgagttaggagcaatggagggacttggcaaactggtcgaaggaggctcacc |
40551637 |
T |
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| Q |
254 |
ggaagaagaaccagaaaccaagaatggtcgaatagcaacttgttgtctcgaaagttgatgcaactgctgcggaaatgaatctgaaatcaagatagtggtt |
353 |
Q |
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| T |
40551638 |
ggaagaagaaccagaaaccaagaatggtcgaatagcaacttgttgtctcgaaagttgatgcaactgctgcggaaatgaatctgaaatcaagatagtggtt |
40551737 |
T |
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| Q |
354 |
agaaaaatactcgaaatagaaaactcagtgc |
384 |
Q |
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| T |
40551738 |
agaaaaatactcgaaatagaaaactcggtgc |
40551768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 384
Target Start/End: Original strand, 40568624 - 40568989
Alignment:
| Q |
19 |
tgaaattggaaggtggaacagatattgagggtctagaagaacggagatgtggtgctggtgcacgtaactcaacaccttgaatatcttgggcaattgaaga |
118 |
Q |
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| T |
40568624 |
tgaaactggagggtggagcagatattgaaggtctagaagaatggagatgtggagcaggggcacgtatctcaccaccttgaatatctcgggcaattgaaga |
40568723 |
T |
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| Q |
119 |
cctagtggtgtttattagaggtggtcttccagagacaccggataaagttcttgacatattgtaaccaggtggtaacatatgttgcgagttaggagcaatg |
218 |
Q |
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| T |
40568724 |
cctagtagtgtttatgaggggtggtcttgcagaggcactggagaaagttcccgacatattgtaaccaggtggtagcatgtgctgtgagttaggagcaatg |
40568823 |
T |
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| Q |
219 |
gagggacttggcaaactggtcgaaggaggctcaccggaagaagaaccagaaaccaagaatggtcgaatagcaacttgttgtctcgaaagttgatgcaact |
318 |
Q |
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| T |
40568824 |
gagggacttggcagactggtcacaggagactcaccggaagaagaaccagaaaccaagaatggacgagtagcagcttgttgtctcgaaagttgatgcaaat |
40568923 |
T |
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| Q |
319 |
gctgcggaaatgaatctgaaatcaagatagtggttagaaaaatactcgaaatagaaaactcagtgc |
384 |
Q |
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| T |
40568924 |
gctgtggaagtgaatctgaaatcaagatagtggttagaaaaatatgtgaaacagaaaactcagtgc |
40568989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 262 - 382
Target Start/End: Complemental strand, 15110211 - 15110091
Alignment:
| Q |
262 |
aaccagaaaccaagaatggtcgaatagcaacttgttgtctcgaaagttgatgcaactgctgcggaaatgaatctgaaatcaagatagtggttagaaaaat |
361 |
Q |
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| T |
15110211 |
aaccacaaaccaagaagggttgagtagaaacttgttgtcttgaaagatgaagcaactgatgtggaagagaatttgaaatcaagatagtcgttagaaaaat |
15110112 |
T |
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| Q |
362 |
actcgaaatagaaaactcagt |
382 |
Q |
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| T |
15110111 |
acgcgaaacaggaaactcagt |
15110091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 15110216 - 15110277
Alignment:
| Q |
258 |
gaagaaccagaaaccaagaatggtcgaatagcaacttgttgtctcgaaagttgatgcaactg |
319 |
Q |
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| T |
15110216 |
gaagaaccaaaaaccaagaatggtcgagtagcaacatattgtcttgaaggttaatgtaactg |
15110277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0971 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0971
Description:
Target: scaffold0971; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 2631 - 2702
Alignment:
| Q |
35 |
aacagatattgagggtctagaagaacggagatgtggtgctggtgcacgtaactcaacaccttgaatatcttg |
106 |
Q |
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| T |
2631 |
aacagatattgagcgtctagaagaacatagatatggtgttggggcacgtaactcaacacctcgaatatcttg |
2702 |
T |
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