View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_low_29 (Length: 318)
Name: NF11646_low_29
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_low_29 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 54462 - 54750
Alignment:
| Q |
18 |
attatagatacttgtcatcccaaggacaaatacacaaaccaaccaatttacgtacttaacttaatagtatatccgaaaattgtgctagacatagtttaaa |
117 |
Q |
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| T |
54462 |
attatagatacttgtcatcccaaggacaaatacacaaaccaaccaatttacgtacttaacttaatagtatatccgaaaattgtgctagacatagtttaaa |
54561 |
T |
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| Q |
118 |
gagtttgtggtagcgttattgcattaaaattgtgctaatgtacatcacaatatacctgactaggtaggtttttgcaactgctaattcttcttttcggtta |
217 |
Q |
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| T |
54562 |
gagtttgtggtagcgttattgcattaaaattgtgctaatgtacatcacaatatacctgactaggtaggtttttgcaactgctaattcttcttttcggtta |
54661 |
T |
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| Q |
218 |
gatttgaagagctccaaaggcgatgatgagttttgtcaattttagctttttggagttttgtgtatctggtctttaaattattggattca |
306 |
Q |
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| T |
54662 |
gatttgaagagctccaaaggcgatgatgagttttgtcaattttaactttttggagttttgtgtatctggtctttaaattattggattca |
54750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 202 - 309
Target Start/End: Complemental strand, 21350148 - 21350041
Alignment:
| Q |
202 |
ttcttcttttcggttagatttgaagagctccaaaggcgatgatgagttttgtcaattttagctttttggagttttgtgtatctggtctttaaattattgg |
301 |
Q |
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| T |
21350148 |
ttcttcttttgggttaggtttggagagcttcaaaggagatgttgaattttgtcaattttaacttttttgagttttgtgtatttggtgttaaaattatggg |
21350049 |
T |
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| Q |
302 |
attcatct |
309 |
Q |
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| T |
21350048 |
attcatct |
21350041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 21221278 - 21221229
Alignment:
| Q |
51 |
acaaaccaaccaatttacgtacttaacttaatagtatatccgaaaattgt |
100 |
Q |
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| T |
21221278 |
acaaaccaaccaatttacgtacttaacttaatagtatatctgaaaattgt |
21221229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 304
Target Start/End: Complemental strand, 21310294 - 21310192
Alignment:
| Q |
202 |
ttcttcttttcggttagatttgaagagctccaaaggcgatgatgagttttgtcaattttagctttttggagttttgtgtatctggtctttaaattattgg |
301 |
Q |
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| T |
21310294 |
ttcttcttttgggttaggtttggagagctccaaaagagatgtttggttttgtcaattttagctttttggagatttgagtaattggccttaaaattaatgg |
21310195 |
T |
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| Q |
302 |
att |
304 |
Q |
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||| |
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| T |
21310194 |
att |
21310192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 21316367 - 21316294
Alignment:
| Q |
208 |
ttttcggttagatttgaagagctccaaaggcgatgatgagttttgtcaattttagctttttggagttttgtgta |
281 |
Q |
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|||| |||||| ||| ||||||||||| |||| |||||||||||||||||| |||||| ||| |||||||| |
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| T |
21316367 |
ttttgggttaggcttggagagctccaaacaagatgttgagttttgtcaattttaactttttagagatttgtgta |
21316294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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