View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_low_30 (Length: 318)
Name: NF11646_low_30
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 303
Target Start/End: Complemental strand, 10968679 - 10968390
Alignment:
| Q |
14 |
aaagcaaccttcatctcctcaaccaaaatcaccttgttcaacctttgttctccatacaatggccatgccaccataggcgctccttcacatacagcttcca |
113 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||||||| |||| |||||||| |||||||||||| |||||||||| | |||||||| |
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| T |
10968679 |
aaagcaaccttcatctcgtcaaccaaaatcaccttgttcagcctttgttctgcatataatggccacgccaccataggcactccttcacaaatagcttcca |
10968580 |
T |
|
| Q |
114 |
acaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaatatcgcaccttgtggtgcccaatttcttacgaccattcccttttg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| |
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| T |
10968579 |
acaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaatattgcaccttgtggtgcccaatttcttgccaccattcccttttg |
10968480 |
T |
|
| Q |
214 |
ctttgtcctctccaaaaacccttctgggagcaactcgtccaaactttgctcctctaagtccaactcactcctaacaacccacaagaatct |
303 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10968479 |
ctttgtcctctccaaaaacccttcaggaagcaactcgtccaaactttgctcctctaagtccaactcactcctaacaacccacaagaatct |
10968390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 303
Target Start/End: Complemental strand, 10982629 - 10982340
Alignment:
| Q |
14 |
aaagcaaccttcatctcctcaaccaaaatcaccttgttcaacctttgttctccatacaatggccatgccaccataggcgctccttcacatacagcttcca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10982629 |
aaagcaaccttcatctcctcaaccaaaatcaccttgttcagcctttgttctgcatacaatggccatgccaccataggcactccttcacatacagcttcca |
10982530 |
T |
|
| Q |
114 |
acaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaatatcgcaccttgtggtgcccaatttcttacgaccattcccttttg |
213 |
Q |
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| T |
10982529 |
acaccgagttccatccacaatgtgtcacgaatccaccgatcgagtcatgctttaatattgcaccttgtggtgcccaatttcttaccaccattcccctttc |
10982430 |
T |
|
| Q |
214 |
ctttgtcctctccaaaaacccttctgggagcaactcgtccaaactttgctcctctaagtccaactcactcctaacaacccacaagaatct |
303 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| |
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| T |
10982429 |
ttttgtcctctccaaaaacccttcagggagcaactcgtccaaactttgctcctctaaatccaactcgctcctaataacccacaagaatct |
10982340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 303
Target Start/End: Complemental strand, 11002859 - 11002570
Alignment:
| Q |
14 |
aaagcaaccttcatctcctcaaccaaaatcaccttgttcaacctttgttctccatacaatggccatgccaccataggcgctccttcacatacagcttcca |
113 |
Q |
| |
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||||| |||||||| |||||||||||||||| |||||||||||||||||| ||||||| |||||||| | ||||||| |||||||||| | |||||||| |
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| T |
11002859 |
aaagccaccttcatttcctcaaccaaaatcattttgttcaacctttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatagcttcca |
11002760 |
T |
|
| Q |
114 |
acaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaatatcgcaccttgtggtgcccaatttcttacgaccattcccttttg |
213 |
Q |
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|||| |||||||||||||| || |||||||||||||||| || || || | ||||| ||| ||||||||||||||||||| || ||||||||||||| |
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| T |
11002759 |
acactgagttccatccacagtgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtggtgcccaatttctcaccaccattcccttttc |
11002660 |
T |
|
| Q |
214 |
ctttgtcctctccaaaaacccttctgggagcaactcgtccaaactttgctcctctaagtccaactcactcctaacaacccacaagaatct |
303 |
Q |
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||| ||||||||||||||||||||||| | ||| || |||||||| | ||||| |||| |||| ||||| |||| ||| |||||||| |
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| T |
11002659 |
cttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgctccttacaatccataagaatct |
11002570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 55 - 303
Target Start/End: Complemental strand, 11019199 - 11018951
Alignment:
| Q |
55 |
cctttgttctccatacaatggccatgccaccataggcgctccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatc |
154 |
Q |
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|||||||||| | |||| |||||||| | ||| ||| | |||||||| | |||||||||||| ||||||||||||||||| ||||| |||||||| | |
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| T |
11019199 |
cctttgttctgcgaacaaaggccatgcaatcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccacccacg |
11019100 |
T |
|
| Q |
155 |
gagtcatgctttaatatcgcaccttgtggtgcccaatttcttacgaccattcccttttgctttgtcctctccaaaaacccttctgggagcaactcgtcca |
254 |
Q |
| |
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|||| ||| | ||||||||| ||||||| ||||||||||| || ||||||||||| | ||||||||||||||||||||||||||| | |||||||||| |
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| T |
11019099 |
gagttatgactcaatatcgcaacttgtggggcccaatttctcacaaccattcccttgtcctttgtcctctccaaaaacccttctggaaataactcgtcca |
11019000 |
T |
|
| Q |
255 |
aactttgctcctctaagtccaactcactcctaacaacccacaagaatct |
303 |
Q |
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|||| || ||| |||| |||||||||||||||||||||||||| |
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| T |
11018999 |
aactcaacttgtctgagtctggttcactcctaacaacccacaagaatct |
11018951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 93 - 303
Target Start/End: Complemental strand, 11079921 - 11079711
Alignment:
| Q |
93 |
ctccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaatatcgcaccttgtggtgcccaatt |
192 |
Q |
| |
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||||||| || | |||||||||||| ||||||||||||||||| |||||||| ||||||| ||| ||| ||| ||| | ||||||||||||||| || |
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| T |
11079921 |
ctccttcgcaaatagcttccaacacggagttccatccacaatgagtcacgaacccaccaactgagctatgtcttagtattgaaccttgtggtgcccagtt |
11079822 |
T |
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| Q |
193 |
tcttacgaccattcccttttgctttgtcctctccaaaaacccttctgggagcaactcgtccaaactttgctcctctaagtccaactcactcctaacaacc |
292 |
Q |
| |
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||| || ||||||||||| | ||||||||||||||||||||||||||| | |||||| ||||||||| | ||||| | |||| || |||||||||| | |
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| T |
11079821 |
tctaacaaccattcccttctcctttgtcctctccaaaaacccttctggcaacaactcatccaaacttagttcctccgactccatatcgctcctaacaatc |
11079722 |
T |
|
| Q |
293 |
cacaagaatct |
303 |
Q |
| |
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||||||||||| |
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| T |
11079721 |
cacaagaatct |
11079711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 11050315 - 11050235
Alignment:
| Q |
55 |
cctttgttctccatacaatggccatgccaccataggcgctccttcacatacagcttccaacaccgagttccatccacaatg |
135 |
Q |
| |
|
|||||||||| || |||| |||||||| | ||| ||| | |||||| | | |||||||||||| ||||||||||||||||| |
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|
| T |
11050315 |
cctttgttctgcaaacaaaggccatgcaatcattggcaccccttcataaatagcttccaacacggagttccatccacaatg |
11050235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 4493253 - 4493290
Alignment:
| Q |
119 |
gagttccatccacaatgtgtcacgaatccaccaatcga |
156 |
Q |
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| T |
4493253 |
gagttccatccacaatgagtcaagaatccaccaatcga |
4493290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 23628117 - 23628149
Alignment:
| Q |
108 |
cttccaacaccgagttccatccacaatgtgtca |
140 |
Q |
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|||||||||||||||||||||||||||| |||| |
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|
| T |
23628117 |
cttccaacaccgagttccatccacaatgagtca |
23628149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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