View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_low_31 (Length: 313)
Name: NF11646_low_31
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 37831590 - 37831376
Alignment:
| Q |
13 |
gcaaatgaacttgtactatgagatacaaatgccacataaattccatggctggattgctcaacaatttttactttttcaggatgtagtatattagtggtgc |
112 |
Q |
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| T |
37831590 |
gcaaatgaacttgtactatgagatacaaatgccacataaattccatggctggattgctcaacaatttttactttttcaggatgtagtatattagtggtgc |
37831491 |
T |
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| Q |
113 |
aaaggcaacggataatggtacacctaatctaattattgaaattatccgtactctctttcatgtccttgttgatattcatttgtacagttcaccgtttatg |
212 |
Q |
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| T |
37831490 |
aaaggcaacggataatggtacacctaatctaattattgaaattttccatactctctttcatgtccttgttgaaattcatttgtacagtacaccgtttatg |
37831391 |
T |
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| Q |
213 |
aaaatgatgagttac |
227 |
Q |
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| T |
37831390 |
aaaatgaagagttac |
37831376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 37831277 - 37831220
Alignment:
| Q |
249 |
aatgctagcatcagttactttacaatacaattcactgtacgtaagctcgtctctgctt |
306 |
Q |
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| T |
37831277 |
aatgctagcatcagttactttacaatacaattcactgtacgtaagctcgtctttgctt |
37831220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 37839486 - 37839428
Alignment:
| Q |
124 |
ataatggtacacctaatctaattattgaaattatccgtactctctttcatgtccttgtt |
182 |
Q |
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| T |
37839486 |
ataatggtacaaataatccaattattgaaattatccatgctctctttcctgtccttgtt |
37839428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 38392009 - 38392067
Alignment:
| Q |
124 |
ataatggtacacctaatctaattattgaaattatccgtactctctttcatgtccttgtt |
182 |
Q |
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| T |
38392009 |
ataatggtacagataatccaattattgaaattatccatgctctctttcctgtccttgtt |
38392067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 38400598 - 38400652
Alignment:
| Q |
124 |
ataatggtacacctaatctaattattgaaattatccgtactctctttcatgtcct |
178 |
Q |
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|||||||||||| ||||| ||||||||||||||||| | || |||||| |||||| |
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| T |
38400598 |
ataatggtacacataatccaattattgaaattatccatgctttctttcctgtcct |
38400652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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