View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11646_low_32 (Length: 307)
Name: NF11646_low_32
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_low_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 28090166 - 28090450
Alignment:
| Q |
11 |
aagaaaagttaaacaaaaaacaggaatatctcaatccaacatccatgtgacccaaaagaaccatccttccacacaattttttggattaagtcagaagtat |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28090166 |
aagaaaagttaaacaaataacaggaatatctcaatccaacatccatgtgacccaaaagaaccatccttccacacaattttttggattaagtcggaagtat |
28090265 |
T |
|
| Q |
111 |
taatttgatt-nnnnnnnncactgaatcccattacagtaataagaatgtactttaactttggacaagtttcaac---cnnnnnnnncatgtgcttagtga |
206 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28090266 |
taatttgattaaataaaaacactgaatcccattacagtaataagaatgtgctttaactttggacaagtttcaacaaaaaaaaaaaacatgtgcttagtga |
28090365 |
T |
|
| Q |
207 |
agcaccaaaccagtcttactcttcaaagagtcgataaaggatagtatattgctattgcaaaacagtgattttgtcagcaacctag |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28090366 |
agcaccaaaccagtcttactcttcaaagagtcgataaaggatagtatattgctattgcaaaacagtgattttgtcagcaacctag |
28090450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University