View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_low_35 (Length: 297)
Name: NF11646_low_35
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 46196825 - 46197110
Alignment:
| Q |
1 |
tatttccgttccttttcctttttcctccgtttcttcttattagaggaaattaagctgagcagctcgaatccaacacaacactccatcattgtgctaactt |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |
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| T |
46196825 |
tatttccgttccttttcctttttcctccttttcttcctattagaggaaattaagctgagcagctcgaatccaac-----actccatcattttgcttactt |
46196919 |
T |
|
| Q |
101 |
ggtctaatttgttccatgtttaaagaacatcacttcactttcccaaaacatacatgcaaaactcctgtgtaataaaacctagtgagttatcaagtgcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46196920 |
ggtctaatttgttccatgtttaaagaacatcacttcactttcccaaaacatacatgcaaaactcctgtgtaataaaacctagtgagttatcaagtgcaca |
46197019 |
T |
|
| Q |
201 |
tcacgtattatatatgtagaatatgatcttttg-aagctcatatttta-----------tcttaccaactatcttattatatctatctttttcat |
283 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
46197020 |
tcacgtat----tatgtagaatatgatcttttgaaagctcatatttaattttatcctactcttaccaactatcttattatatctatctttttcat |
46197110 |
T |
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