View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11646_low_36 (Length: 295)

Name: NF11646_low_36
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11646_low_36
NF11646_low_36
[»] chr4 (4 HSPs)
chr4 (1-278)||(166687-166964)
chr4 (94-265)||(106166-106337)
chr4 (74-165)||(131919-132011)
chr4 (1-38)||(106800-106837)
[»] chr7 (1 HSPs)
chr7 (110-201)||(13055032-13055123)
[»] scaffold0013 (2 HSPs)
scaffold0013 (110-202)||(90218-90310)
scaffold0013 (199-254)||(90398-90453)
[»] chr3 (2 HSPs)
chr3 (108-183)||(12135318-12135393)
chr3 (199-268)||(12135540-12135609)
[»] chr8 (8 HSPs)
chr8 (110-202)||(5652166-5652258)
chr8 (149-202)||(5686961-5687014)
chr8 (103-202)||(5719031-5719130)
chr8 (199-253)||(5652559-5652613)
chr8 (108-202)||(5665946-5666040)
chr8 (110-191)||(5601508-5601589)
chr8 (110-191)||(5639031-5639112)
chr8 (208-268)||(5687147-5687207)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 166964 - 166687
Alignment:
Q  1 tttcatgaatgctcctgtgatttcctgcaataaataaataagaggcaaaggttttatgttgatgttgactgactataagagccatattatttcatatcaa 100  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  166964 tttcatgaatgctcctgagatatcctgcaataaataaataagaggcaaaggttttatgttgatgctgactgactataagagccatattatttcatatcaa 166865  T
Q  101 agaacttagatgaacctgttggggccaattgccttcttccaactgggaattgatgagcaattttgcagcacgatgaagaggagtagggtctctctctgcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  166864 agaacttagatgaacctgttggggccaattgccttcttccaactgggaattgatgagcaattttgcagcacgatgaagaggagtagggtctctctctgcc 166765  T
Q  201 tgaccaccatgaattaaagccataagagcccatgcagtttgtacaacatttgaccgccttccttcaagttgtatatac 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  166764 tgaccaccatgaattaaagccataagagcccatgcagtttgtacaacatttgaccgccttccttcaagttgtatatac 166687  T

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Target: chr4; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 94 - 265
Target Start/End: Complemental strand, 106337 - 106166
Alignment:
Q  94 atatcaaagaacttagatgaacctgttggggccaattgccttcttccaactgggaattgatgagcaattttgcagcacgatgaagaggagtagggtctct 193  Q
    ||||||||| | | |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  106337 atatcaaaggattgagataaacctgttggggccaatcgccttcttccaactgggaattgatgagcaattttgcagcacgatggagaggagtagggtctct 106238  T
Q  194 ctctgcctgaccaccatgaattaaagccataagagcccatgcagtttgtacaacatttgaccgccttccttc 265  Q
    ||||||||| ||  ||||||||||| ||||||||||||||||||| ||||||||||| || || ||||||||    
T  106237 ctctgcctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatcggcttccttc 106166  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 132011 - 131919
Alignment:
Q  74 tataagagccatattatttcatatcaaagaacttagatgaacctgttggggccaattgccttcttccaact-gggaattgatgagcaattttg 165  Q
    ||||||||||||||| ||| ||||||||| | | || ||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||    
T  132011 tataagagccatattgtttaatatcaaaggattgagttgaaccttttgggaccaatcgccttcttccaactggggaattgatgagcaattttg 131919  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 106837 - 106800
Alignment:
Q  1 tttcatgaatgctcctgtgatttcctgcaataaataaa 38  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  106837 tttcatgaatactcctgtgatttcctgccataaataaa 106800  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 13055123 - 13055032
Alignment:
Q  110 atgaacctgttggggccaattgccttcttccaactgggaattgatgagcaattttgcagcacgatgaagaggagtagggtctctctctgcct 201  Q
    ||||||||||||||||||||  || |||| |||||||||||||||||| |||||||||| |||||||||||||||| ||||||| |||||||    
T  13055123 atgaacctgttggggccaatcaccctctttcaactgggaattgatgagaaattttgcagaacgatgaagaggagtaaggtctctttctgcct 13055032  T

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Target: scaffold0013 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 202
Target Start/End: Original strand, 90218 - 90310
Alignment:
Q  110 atgaacctgttggggccaattgccttcttccaactgggaattgatgagcaattttgcagcacgatgaagaggagtagggtctctctctgcctg 202  Q
    ||||||||||||||||||||  |||| || |||||| ||||| || |||||||||||||||||||| ||||||||||||||  ||||||||||    
T  90218 atgaacctgttggggccaatctccttgtttcaactgagaatttataagcaattttgcagcacgatggagaggagtagggtcagtctctgcctg 90310  T

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Target: scaffold0013; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 90398 - 90453
Alignment:
Q  199 cctgaccaccatgaattaaagccataagagcccatgcagtttgtacaacatttgac 254  Q
    |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  90398 cctggccagcatgaattaaacccataagagcccatgcagtttgtacaacatttgac 90453  T

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Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 12135318 - 12135393
Alignment:
Q  108 agatgaacctgttggggccaattgccttcttccaactgggaattgatgagcaattttgcagcacgatgaagaggag 183  Q
    |||||||||||||| |||||||  || ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  12135318 agatgaacctgttgtggccaatcaccctcttccaactgagaattgatgagcaattttgcagcacggtgaagaggag 12135393  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 12135540 - 12135609
Alignment:
Q  199 cctgaccaccatgaattaaagccataagagcccatgcagtttgtacaacatttgaccgccttccttcaag 268  Q
    |||| ||| ||||||||||| ||| ||||||||||||||| ||||||| |||||| |  |||||||||||    
T  12135540 cctggccagcatgaattaaacccagaagagcccatgcagtctgtacaagatttgatctacttccttcaag 12135609  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 202
Target Start/End: Original strand, 5652166 - 5652258
Alignment:
Q  110 atgaacctgttggggccaattgccttcttccaactgggaattgatgagcaattttgcagcacgatgaagaggagtagggtctctctctgcctg 202  Q
    |||||||||||||||||| |  || ||||| || |||||||||||||  |||||||||||||||||||||| ||| |||||| |||| |||||    
T  5652166 atgaacctgttggggccagtcaccctcttctaattgggaattgatgattaattttgcagcacgatgaagagtagttgggtctatctccgcctg 5652258  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 5686961 - 5687014
Alignment:
Q  149 attgatgagcaattttgcagcacgatgaagaggagtagggtctctctctgcctg 202  Q
    ||||||||  |||||| ||||||||||||||||||||||||||||||| |||||    
T  5686961 attgatgattaattttacagcacgatgaagaggagtagggtctctctccgcctg 5687014  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 202
Target Start/End: Original strand, 5719031 - 5719130
Alignment:
Q  103 aacttagatgaacctgttggggccaattgccttcttccaactgggaattgatgagcaattttgcagcacgatgaagaggagtagggtctctctctgcctg 202  Q
    |||| ||||||||||||||||||||||  || || ||    |||  ||||||||  |||||| ||||||||||||||||||||| ||||||||| |||||    
T  5719031 aactgagatgaacctgttggggccaatcaccctcctcttgttggagattgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctg 5719130  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 5652559 - 5652613
Alignment:
Q  199 cctgaccaccatgaattaaagccataagagcccatgcagtttgtacaacatttga 253  Q
    |||| ||| ||||||||||| |||||||||||||||||||||| |||| ||||||    
T  5652559 cctggccagcatgaattaaacccataagagcccatgcagtttgaacaatatttga 5652613  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 202
Target Start/End: Original strand, 5665946 - 5666040
Alignment:
Q  108 agatgaacctgttggggccaattgccttcttccaactgggaattgatgagcaattttgcagcacgatgaagaggagtagggtctctctctgcctg 202  Q
    ||||||||||||||||||||||  || || |  |  |||  ||||||||  |||||| ||||||||||||||||||||| ||||||||| |||||    
T  5665946 agatgaacctgttggggccaatcaccctcctttagttggagattgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctg 5666040  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 5601589 - 5601508
Alignment:
Q  110 atgaacctgttggggccaattgccttcttccaactgggaattgatgagcaattttgcagcacgatgaagaggagtagggtct 191  Q
    ||||||||||||||||||   ||| ||||| |  || |||||||| |  || ||||||||||||||||||||||||||||||    
T  5601589 atgaacctgttggggccagccgccatcttctagttgcgaattgataattaaatttgcagcacgatgaagaggagtagggtct 5601508  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 5639031 - 5639112
Alignment:
Q  110 atgaacctgttggggccaattgccttcttccaactgggaattgatgagcaattttgcagcacgatgaagaggagtagggtct 191  Q
    ||||||||||||||||||   ||| ||||| |  || |||||||| |  || ||||||||||||||||||||||||||||||    
T  5639031 atgaacctgttggggccagccgccatcttctagttgcgaattgataattaaatttgcagcacgatgaagaggagtagggtct 5639112  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 268
Target Start/End: Original strand, 5687147 - 5687207
Alignment:
Q  208 catgaattaaagccataagagcccatgcagtttgtacaacatttgaccgccttccttcaag 268  Q
    ||||||| |||||||| ||||||||||| || ||||||| ||||||  | |||||||||||    
T  5687147 catgaatcaaagccattagagcccatgctgtctgtacaatatttgattggcttccttcaag 5687207  T

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