View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_low_4 (Length: 667)
Name: NF11646_low_4
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 122 - 658
Target Start/End: Original strand, 4537186 - 4537729
Alignment:
| Q |
122 |
tatcacatgttttggtataggcagggtcaccaaggcaatgtaagacttaaaagtaacaaatcatgaagtggcaatttgttaagtaccaaaagatgagatt |
221 |
Q |
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| T |
4537186 |
tatcacatgttttggtatgggtagggtcaccaaggcaatgtaagacttaaaagtaacaaatcatgaagtggcaatttgttaagtaccaaaagatgagatt |
4537285 |
T |
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| Q |
222 |
gtaaataagggactgtccttacttttggacgatcctcg-----taggaactgtataaaaatttattt-gcttatattaatcatgattttagtatggctag |
315 |
Q |
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| T |
4537286 |
gtaaataagggattgtccttacttttggacgacccttgatttgtaggaaccgtataaaaattgattttgcttatattaatcatgattttagtatggctag |
4537385 |
T |
|
| Q |
316 |
acaatcccttcctttaagactcaagtagttgttacctttgaaataattctaattgtttgattattaagaaccaaaatttattataacttttaatctcgat |
415 |
Q |
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| T |
4537386 |
acaatccctttctttaagactcaagtagttgttacctttgaaataattctaaatgtttgattattaagaatcaaaatttattataacttttaatctcgat |
4537485 |
T |
|
| Q |
416 |
tttattaaattataagtaattttgatatggattcaagaaattacgctatgttatatatcaaacttgttatatgact-aaaacattcatacataaattcat |
514 |
Q |
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| T |
4537486 |
tttattaaattataagttattttgatatggattcaagaaattacgttatgttataaatcaaacttgttatatgactgcaaacattcatacataaattcat |
4537585 |
T |
|
| Q |
515 |
ttcattctcaaactcaactttaactatcaattttacaaaacagagtttacaaaattacgattaacaaatattcgtccaataaacactaaatttcttttac |
614 |
Q |
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| T |
4537586 |
ttcattctcaaactcaactttaactatcaattttacaaaacagagtttacaaaattacgattaacaaatattcgtccaataaacactaaatttcttttac |
4537685 |
T |
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| Q |
615 |
tcaatcaccaaaatctataaactcgggtacttcccatcctatgc |
658 |
Q |
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| T |
4537686 |
tcaatcaccaaaatctatcaactcaggtacttcccatcctatgc |
4537729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 4536755 - 4536859
Alignment:
| Q |
18 |
atctcttgcaaacatacggtcacaactcactactcatgtgctagaaaaaagtaggagtaacaaatcta------catttaagccttagatttggaaatat |
111 |
Q |
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| T |
4536755 |
atctcttgcaaacatacggtcacaactcactactcatgtactagaaaaaaataggagtaacaaatgtacaaaatcatttaagccttagatttggaaatat |
4536854 |
T |
|
| Q |
112 |
tacaa |
116 |
Q |
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||||| |
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| T |
4536855 |
tacaa |
4536859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 540 - 590
Target Start/End: Complemental strand, 33648774 - 33648724
Alignment:
| Q |
540 |
atcaattttacaaaacagagtttacaaaattacgattaacaaatattcgtc |
590 |
Q |
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| T |
33648774 |
atcaattttacaaaacagaatttacaaaatcacgattaacaaatgttcgtc |
33648724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 168 - 367
Target Start/End: Original strand, 52084050 - 52084255
Alignment:
| Q |
168 |
ttaaaagtaacaaatcatgaagtggcaatttgttaagtaccaaaagatgagattgtaaataaggga----ctgtccttacttttggacgatcctcg--ta |
261 |
Q |
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|||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| | | |
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| T |
52084050 |
ttaagagtaacaaatcatgaagaggcaatttgttatgtaccaaaagatgagattgtaaataagggattgtctgaccttacttttggacgacccttgattt |
52084149 |
T |
|
| Q |
262 |
g--gaactgtataaaaattta-tttgcttatattaatcatgattttagtatggctagacaatcccttcctttaagactcaagtagttgttacctttgaaa |
358 |
Q |
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| T |
52084150 |
gtagaaccg--caaaaattgattttgcttatacgaatcatgattttagcatggctagacaat-cctttctttaagactcaagtcattgttacctttgaaa |
52084246 |
T |
|
| Q |
359 |
taattctaa |
367 |
Q |
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||||||||| |
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| T |
52084247 |
taattctaa |
52084255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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