View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11646_low_41 (Length: 255)

Name: NF11646_low_41
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11646_low_41
NF11646_low_41
[»] chr4 (53 HSPs)
chr4 (16-174)||(54783177-54783335)
chr4 (175-255)||(39786534-39786614)
chr4 (175-255)||(18360151-18360231)
chr4 (175-255)||(36602697-36602777)
chr4 (177-255)||(55190892-55190970)
chr4 (175-255)||(3901317-3901397)
chr4 (175-255)||(4209366-4209446)
chr4 (175-255)||(4264137-4264217)
chr4 (175-255)||(5123335-5123415)
chr4 (175-255)||(5744261-5744341)
chr4 (175-255)||(23255938-23256018)
chr4 (175-255)||(46212528-46212608)
chr4 (175-255)||(46803634-46803714)
chr4 (175-254)||(19731344-19731423)
chr4 (177-255)||(6494593-6494671)
chr4 (175-255)||(3442522-3442602)
chr4 (175-255)||(5735274-5735354)
chr4 (179-255)||(7738997-7739073)
chr4 (175-255)||(19634026-19634106)
chr4 (175-255)||(28166277-28166357)
chr4 (175-255)||(45198518-45198598)
chr4 (175-255)||(47579290-47579370)
chr4 (181-255)||(55014271-55014345)
chr4 (178-255)||(50033026-50033103)
chr4 (178-255)||(50035545-50035622)
chr4 (175-255)||(26205882-26205962)
chr4 (175-255)||(28151994-28152074)
chr4 (175-255)||(49768448-49768528)
chr4 (42-97)||(54789255-54789310)
chr4 (177-255)||(37688211-37688289)
chr4 (194-255)||(19525892-19525953)
chr4 (16-97)||(52281838-52281919)
chr4 (198-255)||(53568380-53568437)
chr4 (203-255)||(3443565-3443617)
chr4 (191-255)||(19631327-19631391)
chr4 (175-255)||(21859097-21859177)
chr4 (175-255)||(21914960-21915040)
chr4 (223-255)||(55997165-55997197)
chr4 (200-255)||(23603825-23603880)
chr4 (175-242)||(39195672-39195739)
chr4 (189-255)||(1377049-1377115)
chr4 (177-255)||(19652433-19652511)
chr4 (177-255)||(20678765-20678843)
chr4 (189-255)||(39260309-39260375)
chr4 (194-255)||(6923118-6923179)
chr4 (178-255)||(19170717-19170794)
chr4 (194-255)||(25644381-25644442)
chr4 (194-255)||(26659862-26659923)
chr4 (175-207)||(4209585-4209617)
chr4 (175-207)||(18359976-18360008)
chr4 (175-207)||(23603650-23603682)
chr4 (175-207)||(36602920-36602952)
chr4 (175-207)||(50971654-50971686)
[»] chr2 (34 HSPs)
chr2 (175-255)||(32776078-32776158)
chr2 (175-255)||(9877261-9877341)
chr2 (175-255)||(18718242-18718322)
chr2 (175-255)||(34826915-34826995)
chr2 (175-255)||(7443069-7443149)
chr2 (175-255)||(14372080-14372160)
chr2 (175-255)||(14707712-14707792)
chr2 (175-255)||(23671379-23671459)
chr2 (175-255)||(38963522-38963602)
chr2 (175-255)||(41463695-41463775)
chr2 (175-255)||(27559578-27559658)
chr2 (175-255)||(40425427-40425507)
chr2 (175-255)||(41172935-41173015)
chr2 (175-255)||(42038526-42038606)
chr2 (179-255)||(44330391-44330467)
chr2 (175-255)||(3987410-3987490)
chr2 (175-255)||(4045853-4045933)
chr2 (191-255)||(13399283-13399347)
chr2 (195-255)||(30708751-30708811)
chr2 (191-255)||(38137708-38137772)
chr2 (191-255)||(40898659-40898723)
chr2 (211-255)||(43925259-43925303)
chr2 (179-250)||(38588072-38588143)
chr2 (177-255)||(4083212-4083290)
chr2 (189-255)||(24283136-24283202)
chr2 (189-251)||(36199133-36199195)
chr2 (175-255)||(4045411-4045491)
chr2 (175-255)||(20517422-20517502)
chr2 (175-255)||(40598131-40598211)
chr2 (175-255)||(44283457-44283537)
chr2 (189-255)||(16941989-16942055)
chr2 (189-255)||(17012654-17012720)
chr2 (175-255)||(332281-332359)
chr2 (223-255)||(30776371-30776403)
[»] scaffold0366 (2 HSPs)
scaffold0366 (175-255)||(14062-14142)
scaffold0366 (175-255)||(10396-10476)
[»] chr8 (28 HSPs)
chr8 (175-255)||(1580943-1581023)
chr8 (175-255)||(6470848-6470928)
chr8 (175-255)||(40013654-40013734)
chr8 (175-255)||(13138310-13138390)
chr8 (175-255)||(29790945-29791025)
chr8 (175-255)||(38845203-38845283)
chr8 (177-255)||(43066132-43066210)
chr8 (175-255)||(30289927-30290007)
chr8 (175-255)||(45081815-45081895)
chr8 (178-255)||(44123679-44123756)
chr8 (175-255)||(2805654-2805734)
chr8 (175-255)||(3293280-3293360)
chr8 (175-255)||(8351058-8351138)
chr8 (175-255)||(37709902-37709982)
chr8 (175-255)||(38739660-38739740)
chr8 (200-255)||(12893559-12893614)
chr8 (42-97)||(19295295-19295350)
chr8 (189-255)||(14522397-14522463)
chr8 (190-255)||(14847228-14847293)
chr8 (175-255)||(45253752-45253833)
chr8 (191-255)||(886245-886309)
chr8 (191-255)||(9302531-9302595)
chr8 (175-255)||(30380533-30380613)
chr8 (189-255)||(23248794-23248860)
chr8 (195-255)||(2986362-2986421)
chr8 (175-207)||(14522605-14522637)
chr8 (223-255)||(18809327-18809359)
chr8 (223-255)||(31127983-31128015)
[»] chr5 (33 HSPs)
chr5 (175-255)||(4925016-4925096)
chr5 (179-255)||(14475412-14475488)
chr5 (175-255)||(29627271-29627351)
chr5 (175-255)||(35290289-35290369)
chr5 (175-255)||(37516147-37516227)
chr5 (189-255)||(43517238-43517304)
chr5 (175-255)||(23988582-23988662)
chr5 (175-255)||(30779923-30780003)
chr5 (175-255)||(35448175-35448255)
chr5 (189-255)||(37843753-37843819)
chr5 (175-255)||(5213100-5213180)
chr5 (191-255)||(19889673-19889737)
chr5 (175-255)||(32334818-32334898)
chr5 (175-255)||(38697966-38698046)
chr5 (175-255)||(39036413-39036493)
chr5 (175-255)||(40512858-40512938)
chr5 (175-255)||(41411336-41411416)
chr5 (175-255)||(42148310-42148390)
chr5 (178-255)||(42421691-42421768)
chr5 (175-255)||(1830657-1830737)
chr5 (175-255)||(5364423-5364503)
chr5 (175-255)||(40316124-40316204)
chr5 (191-255)||(15268129-15268193)
chr5 (175-255)||(39894784-39894864)
chr5 (177-255)||(43067234-43067312)
chr5 (194-255)||(4300010-4300071)
chr5 (194-255)||(16048105-16048166)
chr5 (194-255)||(22613887-22613948)
chr5 (191-255)||(19087948-19088012)
chr5 (223-255)||(25563551-25563583)
chr5 (223-255)||(32002192-32002224)
chr5 (175-207)||(39036636-39036668)
chr5 (175-255)||(39405767-39405847)
[»] chr3 (36 HSPs)
chr3 (179-255)||(46483558-46483634)
chr3 (175-255)||(25097365-25097445)
chr3 (175-255)||(34827325-34827405)
chr3 (177-255)||(7459998-7460076)
chr3 (175-255)||(3547598-3547678)
chr3 (179-255)||(9145509-9145585)
chr3 (175-255)||(15503028-15503108)
chr3 (175-255)||(18659055-18659135)
chr3 (175-255)||(21906999-21907079)
chr3 (175-255)||(29728276-29728356)
chr3 (175-255)||(38492055-38492135)
chr3 (175-255)||(45093723-45093803)
chr3 (179-255)||(45167306-45167382)
chr3 (175-255)||(53066378-53066457)
chr3 (175-255)||(54840306-54840386)
chr3 (189-255)||(32285354-32285420)
chr3 (177-255)||(49057861-49057939)
chr3 (179-255)||(8559183-8559259)
chr3 (175-255)||(10571322-10571402)
chr3 (175-255)||(27848955-27849035)
chr3 (175-255)||(37832903-37832983)
chr3 (195-255)||(38833687-38833747)
chr3 (175-255)||(43137854-43137934)
chr3 (195-255)||(51062413-51062473)
chr3 (175-255)||(52668663-52668743)
chr3 (180-255)||(10437290-10437365)
chr3 (191-254)||(28690535-28690598)
chr3 (189-255)||(47638072-47638138)
chr3 (189-255)||(51392470-51392536)
chr3 (191-252)||(36665038-36665099)
chr3 (175-255)||(1327314-1327394)
chr3 (175-255)||(4238798-4238878)
chr3 (191-255)||(7671491-7671555)
chr3 (191-255)||(35718033-35718097)
chr3 (194-255)||(17052886-17052947)
chr3 (223-255)||(48707021-48707053)
[»] chr7 (27 HSPs)
chr7 (176-255)||(48531326-48531405)
chr7 (195-255)||(23474147-23474207)
chr7 (175-255)||(31466536-31466616)
chr7 (175-255)||(36819699-36819779)
chr7 (175-255)||(19072772-19072852)
chr7 (175-255)||(32619120-32619200)
chr7 (175-255)||(36859386-36859466)
chr7 (175-255)||(42086816-42086896)
chr7 (175-255)||(47713680-47713760)
chr7 (189-255)||(21392035-21392101)
chr7 (177-255)||(44479898-44479976)
chr7 (175-251)||(2400288-2400364)
chr7 (175-255)||(28185586-28185666)
chr7 (175-255)||(37951123-37951203)
chr7 (175-255)||(47080983-47081063)
chr7 (175-255)||(10464293-10464373)
chr7 (191-255)||(31497881-31497945)
chr7 (175-255)||(34478189-34478269)
chr7 (175-255)||(36905529-36905609)
chr7 (175-255)||(37231742-37231822)
chr7 (191-247)||(38198500-38198556)
chr7 (175-255)||(42834470-42834550)
chr7 (189-255)||(47537940-47538006)
chr7 (178-247)||(4033297-4033366)
chr7 (223-255)||(35500925-35500957)
chr7 (223-255)||(36643213-36643245)
chr7 (175-207)||(48531548-48531580)
[»] scaffold0459 (1 HSPs)
scaffold0459 (175-255)||(12755-12835)
[»] scaffold0051 (1 HSPs)
scaffold0051 (175-255)||(41395-41475)
[»] chr6 (14 HSPs)
chr6 (175-255)||(643609-643689)
chr6 (191-255)||(13207131-13207195)
chr6 (175-255)||(31854821-31854901)
chr6 (175-255)||(33121545-33121625)
chr6 (175-251)||(30237168-30237245)
chr6 (175-255)||(18991907-18991987)
chr6 (179-255)||(22020283-22020359)
chr6 (179-255)||(24150748-24150824)
chr6 (175-251)||(11114568-11114644)
chr6 (175-255)||(25435415-25435494)
chr6 (197-255)||(29986336-29986394)
chr6 (194-255)||(7098051-7098112)
chr6 (178-255)||(29403650-29403727)
chr6 (223-255)||(25163215-25163247)
[»] chr1 (32 HSPs)
chr1 (175-255)||(16751631-16751711)
chr1 (175-255)||(25531781-25531861)
chr1 (175-255)||(48219820-48219900)
chr1 (175-255)||(3529179-3529259)
chr1 (175-255)||(30529228-30529308)
chr1 (175-255)||(32565749-32565829)
chr1 (175-255)||(32988527-32988607)
chr1 (175-255)||(39354442-39354522)
chr1 (175-255)||(48264989-48265069)
chr1 (175-255)||(48376161-48376241)
chr1 (175-255)||(50539263-50539343)
chr1 (175-255)||(52378992-52379072)
chr1 (177-255)||(38458734-38458812)
chr1 (194-255)||(47222236-47222297)
chr1 (175-255)||(23569852-23569932)
chr1 (175-255)||(26441640-26441720)
chr1 (191-255)||(38738156-38738220)
chr1 (195-255)||(45235023-45235083)
chr1 (175-255)||(49805430-49805510)
chr1 (175-255)||(50481281-50481361)
chr1 (175-255)||(50876367-50876447)
chr1 (176-255)||(4605002-4605081)
chr1 (189-255)||(29161859-29161925)
chr1 (188-253)||(31971567-31971632)
chr1 (175-255)||(16266165-16266245)
chr1 (189-255)||(37281109-37281175)
chr1 (194-255)||(16265055-16265116)
chr1 (223-255)||(1849750-1849782)
chr1 (223-255)||(3898749-3898781)
chr1 (175-255)||(14075738-14075818)
chr1 (179-255)||(42708511-42708587)
chr1 (223-255)||(43680120-43680152)
[»] scaffold0092 (1 HSPs)
scaffold0092 (175-255)||(44286-44366)
[»] scaffold0027 (1 HSPs)
scaffold0027 (175-255)||(117324-117404)
[»] scaffold0111 (1 HSPs)
scaffold0111 (223-255)||(38538-38570)


Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 53)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 54783335 - 54783177
Alignment:
Q  16 cacagatagcatgacaaataaagttctctcttttccgtaagagaagcccggtcccacatcccctcacattttactctgatcgctgcccttcccgacgagc 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  54783335 cacagatagcatgacaaataaagttatctcttttccgtaagagaagcccggtcccacataccctcacattttactctgatcgctgcccttcccgacgagc 54783236  T
Q  116 aactcttccctagtaaagttaaagaataatgaatatttgcttattcacatccttaaata 174  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  54783235 aactcttccctagtaaagttaaagaataatgaatacttgcttattcacatccttcaata 54783177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 39786614 - 39786534
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||    
T  39786614 tccctccgtccctcaatagatgacctagttgactctgacacacgtatcaatgcatatgttttatctttgatatcttcaatt 39786534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 18360231 - 18360151
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||||||||||||||||||||||  |||| |  |||||||| ||||||||||||||||||||||||    
T  18360231 tccctccgtccctcaatagatgacctagttgactctgacgcacgtaccaatgcatatgttttatctttgatatcttcaatt 18360151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 36602697 - 36602777
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||||||||||||||||||||||  |||| |  |||||||| ||||||||||||||||||||||||    
T  36602697 tccctccgtccctcaatagatgacctagttgactctgacgcacgtaccaatgcatatgttttatctttgatatcttcaatt 36602777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 55190970 - 55190892
Alignment:
Q  177 cctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||| ||| |||||||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  55190970 cctccgtccctcaatagatgacctagttgactctgacacacttaccaatgcatatgttttatctttgatatcttcaatt 55190892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 3901397 - 3901317
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  3901397 tccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 3901317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 4209366 - 4209446
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||||||| |||||||||||||| ||||| |  ||| |||| ||||||||||||||||||||||||    
T  4209366 tccctccgtccctcaatagatgatctagttgactctgacacacgtaccaatacatatgttttatctttgatatcttcaatt 4209446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 4264137 - 4264217
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  4264137 tccctccgtccctcaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 4264217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 5123415 - 5123335
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||| | ||| |||||||||| ||||||||||||| ||||| |  |||||||| ||||||||||||||||||||||||    
T  5123415 tccctccatccctcaatagatgacttagttgactctgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 5123335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 5744341 - 5744261
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  || |||| ||| ||||||||||||||||||||||||    
T  5744341 tccctccgtccctaaataaatgacctagttgactctgacacacatatcaatgtatatgttttatctttgatatcttcaatt 5744261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 23255938 - 23256018
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||||||||||||||||||||||| ||||| |  ||||||||  |||||| ||||||||||||||||    
T  23255938 tccctccgtccctcaatagatgacctagttgactctgacacacgtaccaatgcatatattttatatttgatatcttcaatt 23256018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 46212608 - 46212528
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  46212608 tccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 46212528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 46803634 - 46803714
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  46803634 tccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 46803714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 19731423 - 19731344
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaat 254  Q
    ||||| |||||| || ||||||||||||||||||| || ||||| |  |||||||| |||||||||||||||||||||||    
T  19731423 tcccttcgttccatattagatgacctagttgactccgacacacgtaccaatgcatatgttttatctttgatatcttcaat 19731344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 6494593 - 6494671
Alignment:
Q  177 cctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||| ||| |||| ||||||||||||||||||| ||||  || |||||||| ||||||||||| ||||||||||||    
T  6494593 cctccgtccctaaataaatgacctagttgactctgacacacatatcaatgcatatgttttatctttaatatcttcaatt 6494671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 3442602 - 3442522
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||| ||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  3442602 tccctccgtccctaaataaatgacatagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 3442522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 5735274 - 5735354
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||| |||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  5735274 tccctccgtccctaaataaatgatctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 5735354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 7739073 - 7738997
Alignment:
Q  179 tccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||| ||| |||| |||||||||||||||| || ||||| || |||||||| |||||||||||||||| |||||||    
T  7739073 tccgtccctaaataaatgacctagttgactccgacacacgtatcaatgcatatgttttatctttgatatattcaatt 7738997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 19634106 - 19634026
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||| ||| ||||||||||||| ||||||||||| || ||||| |  ||| |||| ||||||||||||||||||||||||    
T  19634106 tcccttcgtcccttaatagatgatctagttgactccgacacacgtaccaattcatatgttttatctttgatatcttcaatt 19634026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 28166277 - 28166357
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||| |||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  28166277 tccctccgtccctaaataaatgatctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 28166357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 45198598 - 45198518
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||| |||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  45198598 tccctccgtccctaaataaatgatctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 45198518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 47579290 - 47579370
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||| | ||||  |  |||||||| ||||||||||||||||||||||||    
T  47579290 tccctccgtccctaaataaatgacctagttgactcttacacacataccaatgcatatgttttatctttgatatcttcaatt 47579370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 55014271 - 55014345
Alignment:
Q  181 cgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||| || ||||| ||||||||||||| || ||||| | ||||||||| |||||||||||||||| |||||||    
T  55014271 cgttccatattagataacctagttgactccgacacacgtactaatgcatatgttttatctttgatatattcaatt 55014345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 50033026 - 50033103
Alignment:
Q  178 ctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||| || || |||||||| |||||||||| || ||||| |  |||||||| ||||||||||||||||||||||||    
T  50033026 ctccgtcccatattagatgacttagttgactccgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 50033103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 50035545 - 50035622
Alignment:
Q  178 ctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||| || || ||||||| ||||||||||| || ||||| || |||||||| ||||||||||||| ||||||||||    
T  50035545 ctccgtcccatattagatgatctagttgactccgacacacgtatcaatgcatatgttttatctttgaaatcttcaatt 50035622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 26205962 - 26205882
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||| |||||||||||| | ||||  |  |||||||| ||||||||||||||||||||||||    
T  26205962 tccctccgtccctaaataaatgatctagttgactcttacacacataccaatgcatatgttttatctttgatatcttcaatt 26205882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 28151994 - 28152074
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| | | |||| ||||||||||||||||||| ||||  |  |||||||| ||||||| ||||||||||||||||    
T  28151994 tccctccgtccttaaataaatgacctagttgactctgacacacataccaatgcatatgttttatatttgatatcttcaatt 28152074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 49768448 - 49768528
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||| ||||||||| ||| | ||  || |||||||| ||||||||||||||||||||||||    
T  49768448 tccctccgtccctaaataaatgacttagttgactatgacatacatatcaatgcatatgttttatctttgatatcttcaatt 49768528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 54789255 - 54789310
Alignment:
Q  42 tctcttttccgtaagagaagcccggtcccacatcccctcacattttactctgatcg 97  Q
    |||||||| ||||||||||| |||||||||||| | ||||||||| ||||||||||    
T  54789255 tctctttttcgtaagagaagtccggtcccacatacactcacatttcactctgatcg 54789310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 37688289 - 37688211
Alignment:
Q  177 cctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||| ||| |||| |||| |||| ||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  37688289 cctccgtccctaaataaatgatctagatgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 37688211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 19525953 - 19525892
Alignment:
Q  194 atgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||||||  || ||||| |  |||||||| ||||||||||||||||||||||||    
T  19525953 atgacctagttgacttcgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 19525892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 52281838 - 52281919
Alignment:
Q  16 cacagatagcatgacaaataaagttctctcttttccgtaagagaagcccggtcccacatcccctcacattttactctgatcg 97  Q
    ||||||||||| || | | |||||| ||||||||  |||||||||||| |||||||| || ||||||| | |||||||||||    
T  52281838 cacagatagcaggatacagaaagttttctcttttttgtaagagaagccaggtcccacgtcacctcacactctactctgatcg 52281919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 53568380 - 53568437
Alignment:
Q  198 cctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||| || ||||  || |||||||| ||||||||||||||||||||||||    
T  53568380 cctagttgactccgacacacatatcaatgcatatgttttatctttgatatcttcaatt 53568437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 3443617 - 3443565
Alignment:
Q  203 ttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||| ||||| |  |||||||| ||||||||||||||||||||||||    
T  3443617 ttgactctgacacacgtacaaatgcatatgttttatctttgatatcttcaatt 3443565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 19631327 - 19631391
Alignment:
Q  191 tagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||| || ||||||| || ||||| |  |||||||| ||||||||||||||||||||||||    
T  19631327 tagatgacttaattgactccgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 19631391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 21859177 - 21859097
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| || |||||||||||||||| ||||  |  ||| |||| |||||||||||||||| |||||||    
T  21859177 tccctccgtccctaaataaataacctagttgactctgacacacataccaatacatatgttttatctttgatattttcaatt 21859097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 21915040 - 21914960
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| || |||||||||||||||| ||||  |  ||| |||| |||||||||||||||| |||||||    
T  21915040 tccctccgtccctaaataaataacctagttgactctgacacacataccaatacatatgttttatctttgatattttcaatt 21914960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 55997165 - 55997197
Alignment:
Q  223 aatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||||||||||||||||||||||||    
T  55997165 aatgcatacgttttatctttgatatcttcaatt 55997197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 23603880 - 23603825
Alignment:
Q  200 tagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||||||| ||||| |  |||||||  ||||||||||||||||||||||||    
T  23603880 tagttgactctgacacacgtaccaatgcatctgttttatctttgatatcttcaatt 23603825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 39195739 - 39195672
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatcttt 242  Q
    ||||| ||| ||||| |||||||||||||||||||||| ||||  || ||||||||  ||||||||||    
T  39195739 tcccttcgtcccttattagatgacctagttgactctgacacacatatcaatgcatattttttatcttt 39195672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 1377049 - 1377115
Alignment:
Q  189 aatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||| ||||| ||||||||| ||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  1377049 aataaatgacgtagttgactatgacacacataccaatgcatatgttttatctttgatatcttcaatt 1377115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 19652511 - 19652433
Alignment:
Q  177 cctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||| ||| |||| |||| ||||||||||| || | ||| |  ||| |||| ||||||||||||||||||||||||    
T  19652511 cctccgtccctcaatatatgatctagttgactccgacatacgtaccaattcatatgttttatctttgatatcttcaatt 19652433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 20678843 - 20678765
Alignment:
Q  177 cctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||| ||| |||| |||| |||||||||||||| |||   || ||||||||  ||||||||||||||| |||||||    
T  20678843 cctccgtccctaaataaatgatctagttgactctgacacatatatcaatgcatatattttatctttgatattttcaatt 20678765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 39260375 - 39260309
Alignment:
Q  189 aatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| |||||||||||||| ||| | |  ||| ||||  |||||||||||||||||||||||    
T  39260375 aatagatgatctagttgactctgacacatgtaccaatacatatattttatctttgatatcttcaatt 39260309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 6923179 - 6923118
Alignment:
Q  194 atgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||| ||||||||||  || ||||| |  |||||||| ||||||||||||||||||||||||    
T  6923179 atgatctagttgacttcgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 6923118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 19170794 - 19170717
Alignment:
Q  178 ctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||| ||| ||||||||||||||||||||  || ||| | |  ||||||||  |||||||||| ||||||||||||    
T  19170794 ctccgtccctcaatagatgacctagttgacttcgacacatgtaccaatgcatatattttatctttaatatcttcaatt 19170717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 25644381 - 25644442
Alignment:
Q  194 atgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||| ||||||||||  || ||||| |  |||||||| ||||||||||||||||||||||||    
T  25644381 atgatctagttgacttcgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 25644442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 26659862 - 26659923
Alignment:
Q  194 atgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||||||| || ||| | || | |||||| |||||| |||||||||||||||||    
T  26659862 atgacctagttgactccgacacatgtatcactgcatatgttttagctttgatatcttcaatt 26659923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 4209617 - 4209585
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgac 207  Q
    ||||||||| |||||||||||||||||||||||    
T  4209617 tccctccgtcccttaatagatgacctagttgac 4209585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 18359976 - 18360008
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgac 207  Q
    ||||||||| |||||||||||||||||||||||    
T  18359976 tccctccgtcccttaatagatgacctagttgac 18360008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 23603650 - 23603682
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgac 207  Q
    ||||||||||||| |||||||||||||||||||    
T  23603650 tccctccgttcctcaatagatgacctagttgac 23603682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 36602952 - 36602920
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgac 207  Q
    ||||||||| |||||||||||||||||||||||    
T  36602952 tccctccgtcccttaatagatgacctagttgac 36602920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 50971686 - 50971654
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgac 207  Q
    ||||||||| |||||||||||||||||||||||    
T  50971686 tccctccgtcccttaatagatgacctagttgac 50971654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 32776158 - 32776078
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||||||||||||||||||||||||| |||||||| |  |||||||| ||||||||||||||||||||||||    
T  32776158 tccctccgtcccttaatagatgacctagttgactccgatacacgtaccaatgcatatgttttatctttgatatcttcaatt 32776078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 9877341 - 9877261
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||||||||||||||||||||||| |||||  | |||||||| ||||||||||||||||||| ||||    
T  9877341 tccctccgtccctcaatagatgacctagttgactctgacacacgtgtgaatgcatatgttttatctttgatatctttaatt 9877261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 18718242 - 18718322
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  || |||||||| ||||||||||||||||||||||||    
T  18718242 tccctccgtccctaaataaatgacctagttgactctgacacacatatcaatgcatatgttttatctttgatatcttcaatt 18718322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 34826915 - 34826995
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  | ||||||||| ||||||||||||||||||||||||    
T  34826915 tccctccgtccctaaataaatgacctagttgactctgacacacatactaatgcatatgttttatctttgatatcttcaatt 34826995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 7443149 - 7443069
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||  |||||||||||||||||| ||||| |  |||||||| ||||||||||||||||||||||||    
T  7443149 tccctccgtccctgaataagtgacctagttgactctgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 7443069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 14372080 - 14372160
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  14372080 tccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 14372160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 14707792 - 14707712
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  14707792 tccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 14707712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 23671379 - 23671459
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  23671379 tccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 23671459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 38963522 - 38963602
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||||||||||||||||||||| |||  || ||||| |  |||||||| |||||||||||||| |||||||||    
T  38963522 tccctccgttccttaatagatgacctagttaacttcgacacacgtaccaatgcatatgttttatctttgatttcttcaatt 38963602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 41463775 - 41463695
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||||||||||||||| || ||||| |  |||||||| ||||||||||||||||||||||||    
T  41463775 tccctccgtccctcaataaatgacctagttgactccgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 41463695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 27559578 - 27559658
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||| |||||||||||||| ||||  || |||| ||| ||||||||||||||||||||||||    
T  27559578 tccctccgtccctaaataaatgatctagttgactctgacacacatatcaatgtatatgttttatctttgatatcttcaatt 27559658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 40425507 - 40425427
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||| ||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  40425507 tccctccgtccctaaataaatgacctagttgattctgacacacataccaatgcatatgttttatctttgatatcttcaatt 40425427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 41173015 - 41172935
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||||||| |||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  41173015 tccctccgtccctaaataaatgacctacttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 41172935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 42038526 - 42038606
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||  |||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  42038526 tccctccgtccctaaataagtgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 42038606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 44330391 - 44330467
Alignment:
Q  179 tccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||| | |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  44330391 tccgttcttaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 44330467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 3987490 - 3987410
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||| |||||||||||||| ||||  |  ||| |||| ||||||||||||||||||||||||    
T  3987490 tccctccgtccctaaataaatgatctagttgactctgacacacataccaatacatatgttttatctttgatatcttcaatt 3987410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 4045853 - 4045933
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||| ||||| |||||||||  ||||||| ||||| | ||| | ||||||||| ||||||||||||||||||| ||||    
T  4045853 tccctccattcctcaatagatgatttagttgattctgacatacgtactaatgcatatgttttatctttgatatctttaatt 4045933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 13399347 - 13399283
Alignment:
Q  191 tagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||| ||||||||||||||||| | |  |||||||||||||||| ||| ||||||||||||    
T  13399347 tagatgacttagttgactctgatacatgtaccaatgcatacgttttattttttatatcttcaatt 13399283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 30708751 - 30708811
Alignment:
Q  195 tgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||||| ||| ||||| |  |||||||| ||||||||||||||||||||||||    
T  30708751 tgacctagttgactttgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 30708811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 38137772 - 38137708
Alignment:
Q  191 tagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||| ||||||||||| || ||||| |  |||||||| ||||||||||||||||||||||||    
T  38137772 tagatgatctagttgactccgacacacgtacaaatgcatatgttttatctttgatatcttcaatt 38137708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 40898659 - 40898723
Alignment:
Q  191 tagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||| ||||||||||| || ||||| | ||||| ||| ||||||||||||||||||||||||    
T  40898659 tagatgatctagttgactccgacacacgtactaatgtatatgttttatctttgatatcttcaatt 40898723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 43925303 - 43925259
Alignment:
Q  211 gatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  43925303 gatacacgaactaatgcatatgttttatctttgatatcttcaatt 43925259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 38588143 - 38588072
Alignment:
Q  179 tccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatctt 250  Q
    ||||| ||| |||| |||| |||||||||||||||||||  |  |||||||| |||||||||||||||||||    
T  38588143 tccgtccctaaataaatgatctagttgactctgatacacataccaatgcatatgttttatctttgatatctt 38588072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 4083212 - 4083290
Alignment:
Q  177 cctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||| || ||||||| ||||||||||| || ||||  || |||||||| ||||||||||| ||||||| ||||    
T  4083212 cctccgttccatactagatgagctagttgactccgacacacatatcaatgcatatgttttatctttaatatctttaatt 4083290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 24283202 - 24283136
Alignment:
Q  189 aatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||||||||  || || ||||| | | ||||||| ||||||||||||||||||||||||    
T  24283202 aatagatgacctagttgtttccgacacacgtactgatgcatatgttttatctttgatatcttcaatt 24283136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 36199195 - 36199133
Alignment:
Q  189 aatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttc 251  Q
    |||| |||| |||||||||||||| ||||  | ||||||||| ||||||||||||||||||||    
T  36199195 aataaatgatctagttgactctgacacacatactaatgcatatgttttatctttgatatcttc 36199133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 4045491 - 4045411
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||  | ||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  4045491 tccctccgtccctaaataaatgatttggttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 4045411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 20517422 - 20517502
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||  || |||| ||||| || |||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  20517422 tccctccgtctctaaataaatgacataattgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 20517502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 40598131 - 40598211
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| || || || |||| ||||||||||  || ||||| |  |||||||| ||||||||||||||||||||||||    
T  40598131 tccctccgtcccatattaaatgatctagttgacttcgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 40598211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 44283537 - 44283457
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| | | |||| ||||||||||||| ||||| ||||  |  ||||||||  |||||||||||||||||||||||    
T  44283537 tccctccgtccttaaataaatgacctagttgattctgacacacataccaatgcatatattttatctttgatatcttcaatt 44283457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 16942055 - 16941989
Alignment:
Q  189 aatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||| |||| |||||||||||||| ||||  |  |||||||| |||||||||||||||| |||||||    
T  16942055 aataaatgatctagttgactctgacacacataccaatgcatatgttttatctttgatatattcaatt 16941989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 17012720 - 17012654
Alignment:
Q  189 aatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||| |||| |||||||||||||| ||||  |  |||||||| |||||||||||||||| |||||||    
T  17012720 aataaatgatctagttgactctgacacacataccaatgcatatgttttatctttgatatattcaatt 17012654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 332281 - 332359
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| || || ||||||||||| ||||||| ||  |||| |  || ||||| ||||||||||||||||||||||||    
T  332281 tccctccgtcccatattagatgacctatttgactccga--cacgtaccaacgcatatgttttatctttgatatcttcaatt 332359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 30776403 - 30776371
Alignment:
Q  223 aatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||| ||||||||||||||||||||||||    
T  30776403 aatgcatatgttttatctttgatatcttcaatt 30776371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 14062 - 14142
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||  |||||||||||||||||||||||| |  |||||||| ||||||||||||||||||||||||    
T  14062 tccctccgtccctaaataagtgacctagttgactctgatacacgtaccaatgcatatgttttatctttgatatcttcaatt 14142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 10396 - 10476
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||  |||||||||||||||||| ||||  | ||||||||| ||||||||||||||||||||||||    
T  10396 tccctccgtccctaaataagtgacctagttgactctgacacacatactaatgcatatgttttatctttgatatcttcaatt 10476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 1581023 - 1580943
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||| || ||||||||  |||||||||||||||||||||||    
T  1581023 tccctccgtccctgaataaatgacctagttgactctgacacacgtatcaatgcatatattttatctttgatatcttcaatt 1580943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 6470848 - 6470928
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||| |||| ||| |||| ||||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||    
T  6470848 tcccaccgtccctcaatatatgacctagttgactctgacacacgtatcaatgcatatgttttatctttgatatcttcaatt 6470928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 40013654 - 40013734
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| |||||||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  40013654 tccctccgtcccttaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 40013734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 13138390 - 13138310
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||| || ||| |||| ||||||||||||||||||| ||||| |  |||||||| ||||||||||||||||||||||||    
T  13138390 tccctctgtccctcaataaatgacctagttgactctgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 13138310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 29790945 - 29791025
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  29790945 tccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 29791025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 38845203 - 38845283
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  38845203 tccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 38845283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 43066132 - 43066210
Alignment:
Q  177 cctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||| ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  43066132 cctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 43066210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 30289927 - 30290007
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| | ||  |  |||||||| ||||||||||||||||||||||||    
T  30289927 tccctccgtccctaaataaatgacctagttgactctgacatacataccaatgcatatgttttatctttgatatcttcaatt 30290007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 45081815 - 45081895
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| || |||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  45081815 tccctccgtccctaaataaataacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 45081895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 44123679 - 44123756
Alignment:
Q  178 ctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||| || || ||||||| ||||||||||| || ||||| || |||||||| ||||||||||||| ||||||||||    
T  44123679 ctccgtcccatattagatgatctagttgactccgacacacgtatcaatgcatatgttttatctttgaaatcttcaatt 44123756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 2805734 - 2805654
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||||| |||||||||||| | ||  |  |||||||| ||||||||||||||||||||||||    
T  2805734 tccctccgtccctaaataaatgacccagttgactctgacatacataccaatgcatatgttttatctttgatatcttcaatt 2805654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 3293360 - 3293280
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||| |||||||||||||| |||   |  |||||||| ||||||||||||||||||||||||    
T  3293360 tccctccgtccctaaataaatgatctagttgactctgacacatataccaatgcatatgttttatctttgatatcttcaatt 3293280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 8351138 - 8351058
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||  ||| |||||||||||||| ||||| |  | |||||| ||||||||||||||||||||||||    
T  8351138 tccctccgtccctaaataagtgatctagttgactctgacacacgtaccagtgcatatgttttatctttgatatcttcaatt 8351058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 37709902 - 37709982
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||| | ||||  |  |||| ||| ||||||||||||||||||||||||    
T  37709902 tccctccgtccctaaataaatgacctagttgactctaacacacataccaatgtatatgttttatctttgatatcttcaatt 37709982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 38739660 - 38739740
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| | | |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||| ||||||||||||    
T  38739660 tccctccgtccttaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttaatatcttcaatt 38739740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 12893559 - 12893614
Alignment:
Q  200 tagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||| || ||||| || |||||||| ||||||||||||||||||||||||    
T  12893559 tagttgactccgacacacgtatcaatgcatatgttttatctttgatatcttcaatt 12893614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 19295295 - 19295350
Alignment:
Q  42 tctcttttccgtaagagaagcccggtcccacatcccctcacattttactctgatcg 97  Q
    |||||||| ||||||||||| |||||||||||| | ||||||||| ||||||||||    
T  19295295 tctctttttcgtaagagaagtccggtcccacatacactcacatttcactctgatcg 19295350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 14522397 - 14522463
Alignment:
Q  189 aatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| |||||||| | | | ||||| || |||||||| ||||||||||||||||||||||||    
T  14522397 aatagatgatctagttgattttaacacacgtatcaatgcatatgttttatctttgatatcttcaatt 14522463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 14847228 - 14847293
Alignment:
Q  190 atagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||||||||||| || || ||||| |  |||||||| ||||||||||||||||||| ||||    
T  14847228 atagatgacctagttgattccgacacacgcaccaatgcatatgttttatctttgatatctttaatt 14847293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 45253752 - 45253833
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgat-acacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||| || ||||||||||||| ||||||||||| ||  ||||| |  |||||||| ||||||| ||||||||||||||||    
T  45253752 tccctctgtcccttaatagatgatctagttgactccgacgacacgtaccaatgcatatgttttatttttgatatcttcaatt 45253833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 886309 - 886245
Alignment:
Q  191 tagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||| |||||||| || ||||| |  |||||||| ||||||||||||||||||| ||||    
T  886309 tagatgacctggttgactccgacacacgtaccaatgcatatgttttatctttgatatctttaatt 886245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 9302595 - 9302531
Alignment:
Q  191 tagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||||| |||||||||  ||||  || |||| ||| ||||||||||||||||||||||||    
T  9302595 tagatgacctaattgactctggcacacatataaatgtatatgttttatctttgatatcttcaatt 9302531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 30380533 - 30380613
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||  ||| ||| |||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  30380533 tccctccgtccctaaataagtgatctaattgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 30380613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 23248794 - 23248860
Alignment:
Q  189 aatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||| ||||||||||||||||| | |||   || |||||||| |||||||||||||||| |||||||    
T  23248794 aataaatgacctagttgactctaacacatatatcaatgcatatgttttatctttgatatattcaatt 23248860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 2986362 - 2986421
Alignment:
Q  195 tgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||||||||| ||||  |  |||||||| |||||||| |||||||||||||||    
T  2986362 tgacctagttgactctgacacacataccaatgcatatgttttatc-ttgatatcttcaatt 2986421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 14522637 - 14522605
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgac 207  Q
    ||||||||| |||||||||||||||||||||||    
T  14522637 tccctccgtcccttaatagatgacctagttgac 14522605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 18809327 - 18809359
Alignment:
Q  223 aatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||| ||||||||||||||||||||||||    
T  18809327 aatgcatatgttttatctttgatatcttcaatt 18809359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 31128015 - 31127983
Alignment:
Q  223 aatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||| ||||||||||||||||||||||||    
T  31128015 aatgcatatgttttatctttgatatcttcaatt 31127983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 4925096 - 4925016
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||||||||||||||||| |||| ||||| |  |||||||| ||||||||||||||||||||||||    
T  4925096 tccctccgtccctcaatagatgacctagttgaccctgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 4925016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 14475488 - 14475412
Alignment:
Q  179 tccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||| ||||||||||||||||||||||||| || ||||| |  |||||||| ||||||||||||||||||||||||    
T  14475488 tccgtcccttaatagatgacctagttgactccgacacacgtacaaatgcatatgttttatctttgatatcttcaatt 14475412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 29627271 - 29627351
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  || |||||||| ||||||||||||||||||||||||    
T  29627271 tccctccgtccctaaataaatgacctagttgactctgacacacatatcaatgcatatgttttatctttgatatcttcaatt 29627351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 35290289 - 35290369
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||||||||||||||||||||||| ||||| |  ||||||||  |||||||||||||||||||||||    
T  35290289 tccctccgtccctcaatagatgacctagttgactctgacacacgtaccaatgcatatattttatctttgatatcttcaatt 35290369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 37516147 - 37516227
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||||||| |||||||||||||| ||||| |  |||||||| ||||||||||||||||||||||||    
T  37516147 tccctccgtccctcaatagatgatctagttgactctgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 37516227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 43517304 - 43517238
Alignment:
Q  189 aatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||||||||||||||| ||||| | ||||||||| ||||||||||||||||| ||||||    
T  43517304 aatagatgacctagttgactctgacacacgtactaatgcatatgttttatctttgatatcatcaatt 43517238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 23988582 - 23988662
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  23988582 tccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 23988662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 30780003 - 30779923
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||||||| ||||||||||||||||||||| || ||||| |  ||| |||| ||||||||||| ||||||||||||    
T  30780003 tccctccgttcctcaatagatgacctagttgactccgacacacgtaccaatacatatgttttatctttcatatcttcaatt 30779923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 35448255 - 35448175
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  35448255 tccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 35448175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 37843819 - 37843753
Alignment:
Q  189 aatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||||||||||||||| ||||| |  |||||||| ||||||| ||||||||||||||||    
T  37843819 aatagatgacctagttgactctgacacacgtaccaatgcatatgttttatatttgatatcttcaatt 37843753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 5213180 - 5213100
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||  |||||||||||||||||| ||||| |  |||||||| ||||||||||| ||||||||||||    
T  5213180 tccctccgtccctgaataagtgacctagttgactctgacacacgtaccaatgcatatgttttatctttaatatcttcaatt 5213100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 19889673 - 19889737
Alignment:
Q  191 tagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||| |||||||||||||| |||||||| |  |||||||| ||||||||||||||||||||||||    
T  19889673 tagaggacctagttgactccgatacacgtaccaatgcatatgttttatctttgatatcttcaatt 19889737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 32334898 - 32334818
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||| || ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  32334898 tccctctgtccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 32334818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 38697966 - 38698046
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||||||| |||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  38697966 tccctccgtccctaaataaatgacctaattgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 38698046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 39036413 - 39036493
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||  || |||||||||| ||||||||||||| ||||| |  |||| ||| ||||||||||||||||||||||||    
T  39036413 tccctccgtctctcaatagatgacatagttgactctgacacacgtaccaatgtatatgttttatctttgatatcttcaatt 39036493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 40512938 - 40512858
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||  |||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  40512938 tccctccgtccctaaataagtgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 40512858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 41411416 - 41411336
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||||||||| |||||||||  || ||||| |  |||||||| ||||||||||||||||||||||||    
T  41411416 tccctccgtccctcaatagatgacttagttgacttcgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 41411336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 42148310 - 42148390
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||| |||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  42148310 tccctccgtccctaaataaatgatctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 42148390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 42421691 - 42421768
Alignment:
Q  178 ctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| || ||||||| ||||||||||| || ||||| |   ||||||| ||||||||||||||||||||||||    
T  42421691 ctccgttccatattagatgatctagttgactccgacacacgtacctatgcatatgttttatctttgatatcttcaatt 42421768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 1830657 - 1830737
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||||||||| |||||||||  || ||| | |  |||||||| ||||||||||||||||||||||||    
T  1830657 tccctccgtccctcaatagatgacttagttgacttcgacacatgtaccaatgcatatgttttatctttgatatcttcaatt 1830737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 5364423 - 5364503
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||  |||||||||||||||||| ||||  |  |||||||| |||||||||||||||| |||||||    
T  5364423 tccctccgtccctaaataagtgacctagttgactctgacacacataccaatgcatatgttttatctttgatatattcaatt 5364503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 40316124 - 40316204
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||||||||| |||||||||  || ||| | |  |||||||| ||||||||||||||||||||||||    
T  40316124 tccctccgtccctcaatagatgacttagttgacttcgacacatgtaccaatgcatatgttttatctttgatatcttcaatt 40316204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 15268129 - 15268193
Alignment:
Q  191 tagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||  |||||||||| || ||||| ||||||||||| ||||||| ||| ||||||||||||    
T  15268129 tagatgatttagttgactccgacacacgtattaatgcatatgttttatttttaatatcttcaatt 15268193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 39894784 - 39894864
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||  ||| |||||||||||||| | ||  |  |||||||| ||||||||||||||||||||||||    
T  39894784 tccctccgtccctaaataagtgatctagttgactctgacatacataccaatgcatatgttttatctttgatatcttcaatt 39894864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 43067234 - 43067312
Alignment:
Q  177 cctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||| || || || |||| ||||||||||  || ||||| |  |||||||| ||||||||||||||||||||||||    
T  43067234 cctccgtcccatattaaatgatctagttgacttcgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 43067312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 4300071 - 4300010
Alignment:
Q  194 atgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||| ||||||||||  || ||||| |  |||||||| ||||||||||||||||||||||||    
T  4300071 atgatctagttgacttcgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 4300010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 16048105 - 16048166
Alignment:
Q  194 atgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||| ||||||||||  || ||||| |  |||||||| ||||||||||||||||||||||||    
T  16048105 atgatctagttgacttcgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 16048166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 22613948 - 22613887
Alignment:
Q  194 atgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||| ||||||||||  || ||||| |  |||||||| ||||||||||||||||||||||||    
T  22613948 atgatctagttgacttagacacacgtaccaatgcatatgttttatctttgatatcttcaatt 22613887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 19088012 - 19087948
Alignment:
Q  191 tagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||| |||||||||| || ||||| |  |||||||| ||||||| | ||||||||||||||    
T  19088012 tagatgacgtagttgactccgacacacgtaccaatgcataagttttatttatgatatcttcaatt 19087948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 25563551 - 25563583
Alignment:
Q  223 aatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||| ||||||||||||||||||||||||    
T  25563551 aatgcatatgttttatctttgatatcttcaatt 25563583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 32002224 - 32002192
Alignment:
Q  223 aatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||| ||||||||||||||||||||||||    
T  32002224 aatgcatatgttttatctttgatatcttcaatt 32002192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 39036668 - 39036636
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgac 207  Q
    ||||||||| |||||||||||||||||||||||    
T  39036668 tccctccgtcccttaatagatgacctagttgac 39036636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 39405767 - 39405847
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| || || || |||| ||||||||||  || ||||| |  |||||||| ||||||||||| ||||||||||||    
T  39405767 tccctccgtcccatattaaatgatctagttgacttcgagacacgtaccaatgcatatgttttatctttaatatcttcaatt 39405847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 46483558 - 46483634
Alignment:
Q  179 tccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||| ||| |||||||||||||||||||||||| ||||| |  |||||||| ||||||||||||||||||||||||    
T  46483558 tccgtccctcaatagatgacctagttgactctgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 46483634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 25097445 - 25097365
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||||||||| ||||||||||| | ||||| |  |||||||| ||||||||||||||||||||||||    
T  25097445 tccctccgtacctcaatagatgacttagttgactctaacacacgtaccaatgcatatgttttatctttgatatcttcaatt 25097365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 34827325 - 34827405
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||  |||||||||||||||||| ||||| |  |||||||| ||||||||||||||||||||||||    
T  34827325 tccctccgtccctgaataagtgacctagttgactctgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 34827405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 7460076 - 7459998
Alignment:
Q  177 cctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||| ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  7460076 cctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 7459998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 3547678 - 3547598
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| || || ||||||||||| ||||||| || ||||| |  |||||||| ||||||||||||||||||||||||    
T  3547678 tccctccgtcccatattagatgacctaattgactccgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 3547598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 9145509 - 9145585
Alignment:
Q  179 tccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||| || ||||||||||||||||||| || ||||| |  |||||||| ||||||||||||||||||| ||||    
T  9145509 tccgttccatattagatgacctagttgactccgacacacgtaccaatgcatatgttttatctttgatatcttgaatt 9145585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 15503028 - 15503108
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||||||||||| ||||||| || | ||| || |||||||| |||||||||||||||| |||||||    
T  15503028 tccctccgtccctcaatagatgacctaattgactccgacatacgtatcaatgcatatgttttatctttgatatattcaatt 15503108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 18659055 - 18659135
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||| |||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  18659055 tccctccgtccctaaataaatgatctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 18659135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 21906999 - 21907079
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||| |||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  21906999 tccctccgtccctcaataaatgatctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 21907079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 29728356 - 29728276
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||| | |  |||||||| |||||||||| |||||||||||||    
T  29728356 tccctccgtccctcaataaatgacctagttgactctgacacaagtaccaatgcatatgttttatcttagatatcttcaatt 29728276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 38492055 - 38492135
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||  |||||||||||||||||| ||||| |  |||||||| ||||||||||| ||||||||||||    
T  38492055 tccctccgtccctgaataagtgacctagttgactctgacacacgtaccaatgcatatgttttatctttaatatcttcaatt 38492135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 45093723 - 45093803
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||| | || |||||||  ||||||||||||| ||||| |  |||||||| ||||||||||||||||||||||||    
T  45093723 tccctccgttacatattagatgatttagttgactctgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 45093803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 45167306 - 45167382
Alignment:
Q  179 tccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||| | |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  45167306 tccgttcttaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 45167382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 53066378 - 53066457
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||||||||| ||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  53066378 tccctccgtccctcaatagatgac-tagttgactctgacacacttaccaatgcatatgttttatctttgatatcttcaatt 53066457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 54840386 - 54840306
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||| | ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  54840386 tccctccatccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 54840306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 32285420 - 32285354
Alignment:
Q  189 aatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||| ||||||||||||||||| ||||| |  ||| |||| ||||||||||||||||||||||||    
T  32285420 aatagacgacctagttgactctgacacacgtaccaatacatatgttttatctttgatatcttcaatt 32285354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 49057861 - 49057939
Alignment:
Q  177 cctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||| ||| |||| |||||||||||||||  || ||||| |  |||||||| ||||||||||||||||||||||||    
T  49057861 cctccgtccctcaataaatgacctagttgacttcgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 49057939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 8559259 - 8559183
Alignment:
Q  179 tccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||| ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||| ||||||||||||    
T  8559259 tccgtccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttaatatcttcaatt 8559183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 10571402 - 10571322
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| |||  ||| ||||||||||||||||||| ||||  |  ||| |||| ||||||||||||||||||||||||    
T  10571402 tccctccgtccctcgataaatgacctagttgactctgacacacataccaatacatatgttttatctttgatatcttcaatt 10571322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 27848955 - 27849035
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| | |||||||||||||||||| ||| | ||  |  |||||||| ||||||||||||||||||||||||    
T  27848955 tccctccgtccctcattagatgacctagttgactttgacatacataccaatgcatatgttttatctttgatatcttcaatt 27849035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 37832903 - 37832983
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||| ||||||||||||| ||||  |  |||||||| ||||||| ||||||||||||||||    
T  37832903 tccctccgtccctaaataaatgacatagttgactctgacacacataccaatgcatatgttttatttttgatatcttcaatt 37832983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 38833687 - 38833747
Alignment:
Q  195 tgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  38833687 tgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 38833747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 43137854 - 43137934
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||| |||||||||||||| ||||  |  |||||||| |||||||||||||||| |||||||    
T  43137854 tccctccgtccctaaataaatgatctagttgactctgacacacataccaatgcatatgttttatctttgatattttcaatt 43137934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 51062413 - 51062473
Alignment:
Q  195 tgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  51062413 tgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 51062473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 52668743 - 52668663
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||||||||||| |||||| ||||  || ||||||||  ||||||||||||||| |||||||    
T  52668743 tccctccgtccctaaataaatgacctagttggctctgacacacatatcaatgcatatattttatctttgatattttcaatt 52668663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 10437290 - 10437365
Alignment:
Q  180 ccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||| | |||||||| ||||||||||||| ||||| |  |||  ||| ||||||||||||||||||||||||    
T  10437290 ccgttcctcagtagatgacttagttgactctgacacacgtaccaatttatatgttttatctttgatatcttcaatt 10437365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 28690535 - 28690598
Alignment:
Q  191 tagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaat 254  Q
    ||||||||||||||||||| || ||||  |  |||||||| |||||||||||||||||||||||    
T  28690535 tagatgacctagttgactccgacacacataccaatgcatatgttttatctttgatatcttcaat 28690598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 47638072 - 47638138
Alignment:
Q  189 aatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||| || |||| ||||||||||| |  |||||||| ||||||||||| ||||||||||||    
T  47638072 aatagatgacttaattgattctgatacacgtaccaatgcatatgttttatctttaatatcttcaatt 47638138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 51392536 - 51392470
Alignment:
Q  189 aatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||| ||||||||||||||||| | ||||  |  |||||||| ||||||||||||||||||||||||    
T  51392536 aataaatgacctagttgactcttacacacataccaatgcatatgttttatctttgatatcttcaatt 51392470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 36665038 - 36665099
Alignment:
Q  191 tagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttca 252  Q
    |||||||| || ||||||| |||||||| |  |||||||| |||||||||||||||||||||    
T  36665038 tagatgacttaattgactccgatacacgtaccaatgcatatgttttatctttgatatcttca 36665099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 1327314 - 1327394
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||| |||||||||||| | | ||  |  |||||||| ||||||||||||||||||||||||    
T  1327314 tccctccgtccctaaataaatgatctagttgactcttacatacataccaatgcatatgttttatctttgatatcttcaatt 1327394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 4238878 - 4238798
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||| || || |||| ||||||||||  || ||||| |  |||||||| ||||||||||| ||||||||||||    
T  4238878 tccctccgttccatattaaatgatctagttgacttcgacacacgtaccaatgcatatgttttatctttaatatcttcaatt 4238798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 7671555 - 7671491
Alignment:
Q  191 tagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||||||| || ||  || | || |||||||| ||||||||||||||||||||||||    
T  7671555 tagatgacctagttgattcagacgcatgtatcaatgcatatgttttatctttgatatcttcaatt 7671491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 35718097 - 35718033
Alignment:
Q  191 tagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||  ||||||||||||| ||||| |  |||||||| |||||||| |||||||||||||||    
T  35718097 tagatgatttagttgactctgacacacgtaccaatgcatatgttttatccttgatatcttcaatt 35718033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 17052886 - 17052947
Alignment:
Q  194 atgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||| ||||||||||  || ||||| |  |||||||| ||||||||||||||||||||||||    
T  17052886 atgatctagttgacttcgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 17052947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 48707053 - 48707021
Alignment:
Q  223 aatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||| ||||||||||||||||||||||||    
T  48707053 aatgcatatgttttatctttgatatcttcaatt 48707021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 48531326 - 48531405
Alignment:
Q  176 ccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||| |||||||||  ||||||||||||| ||||| || ||||||||  |||||||||||||||||||||||    
T  48531326 ccctccgttcctcaatagatgatttagttgactctgacacacgtatcaatgcatatattttatctttgatatcttcaatt 48531405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 23474207 - 23474147
Alignment:
Q  195 tgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||    
T  23474207 tgacctagttgactctgacacacgtatcaatgcatatgttttatctttgatatcttcaatt 23474147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 31466616 - 31466536
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||  |||||||||||||||||| ||||| |  |||||||| ||||||||||||||||||||||||    
T  31466616 tccctccgtccctaaataagtgacctagttgactctgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 31466536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 36819699 - 36819779
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  36819699 tccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 36819779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 19072772 - 19072852
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||| ||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  19072772 tccctccgtccctaaataaatgacctagttgattctgacacacataccaatgcatatgttttatctttgatatcttcaatt 19072852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 32619200 - 32619120
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||| ||||||||||||| ||||  || |||||||| ||||||| ||||||||||||||||    
T  32619200 tccctccgtccctaaataaatgacttagttgactctgacacacatatcaatgcatatgttttatttttgatatcttcaatt 32619120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 36859466 - 36859386
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||||||| |||| |||||||| |||||||| | ||||  |  |||||||| ||||||||||||||||||||||||    
T  36859466 tccctccgttcctaaataaatgacctaattgactctaacacacataccaatgcatatgttttatctttgatatcttcaatt 36859386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 42086896 - 42086816
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||| | ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  42086896 tccctccatccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 42086816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 47713760 - 47713680
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||  |||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  47713760 tccctccgtccctaaataagtgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 47713680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 21392035 - 21392101
Alignment:
Q  189 aatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| |||||||||||||| ||||| |  |||||||| ||||||||||||||||||| ||||    
T  21392035 aatagatgatctagttgactctgacacacgtaccaatgcatatgttttatctttgatatctttaatt 21392101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 44479976 - 44479898
Alignment:
Q  177 cctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||| ||| ||||  |||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  44479976 cctccgtccctaaataagtgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 44479898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 2400288 - 2400364
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttc 251  Q
    ||||||||| ||| |||| ||||||||||||||||||| |||   |  |||||||| ||||||||||||||||||||    
T  2400288 tccctccgtccctaaataaatgacctagttgactctgacacatataccaatgcatatgttttatctttgatatcttc 2400364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 28185666 - 28185586
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  |  ||| |||| ||||||||||||||||||| ||||    
T  28185666 tccctccgtccctaaataaatgacctagttgactctgacacacataccaatacatatgttttatctttgatatctttaatt 28185586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 37951203 - 37951123
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| | | |||| |||||||||||||||||||  |||  |  |||||||| ||||||||||||||||||||||||    
T  37951203 tccctccgtccataaataaatgacctagttgactctgacgcacataccaatgcatatgttttatctttgatatcttcaatt 37951123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 47080983 - 47081063
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||  ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||| ||||    
T  47080983 tccctccgtccctaaatgaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttaaatt 47081063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 10464373 - 10464293
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| || || || ||||  ||||||||| ||| ||||| |  |||||||| ||||||||||||||||||||||||    
T  10464373 tccctccgtcccatattaaatgatatagttgactttgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 10464293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 31497945 - 31497881
Alignment:
Q  191 tagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||| ||||||||||||| || ||||  | |||| |||| ||||||||||||||||||||||||    
T  31497945 tagataacctagttgactccgacacacatactaatacatatgttttatctttgatatcttcaatt 31497881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 34478269 - 34478189
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| || || || || ||||||||||||  || ||||| |  |||||||| ||||||||||||||||||||||||    
T  34478269 tccctccgtcccatattaaataacctagttgacttcgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 34478189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 36905529 - 36905609
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||  ||||||||||||| ||||  |  ||| |||| ||||||||||||||||||||||||    
T  36905529 tccctccgtccctaaataaatgatttagttgactctgacacacataccaatacatatgttttatctttgatatcttcaatt 36905609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 37231822 - 37231742
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| || || || |||| ||||||||||  || ||||| |  |||||||| ||||||||||||||||||||||||    
T  37231822 tccctccgtcccatattaaatgatctagttgacttcgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 37231742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 38198500 - 38198556
Alignment:
Q  191 tagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatat 247  Q
    |||||||||||||||||||||||||||  || ||||||||  |||||||||| ||||    
T  38198500 tagatgacctagttgactctgatacacatatcaatgcatattttttatctttaatat 38198556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 42834550 - 42834470
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||  || |||| |||||||| |||||| ||||||||  |  |||| ||| ||||||||||||||||||||||||    
T  42834550 tccctccgtctctaaataaatgacctatttgactttgatacacataccaatgtatatgttttatctttgatatcttcaatt 42834470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 47537940 - 47538006
Alignment:
Q  189 aatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||| |||| ||| |||| ||||||| ||| |  |||||||| ||||||||||||||||||||||||    
T  47537940 aataaatgatctaattgattctgatatacgtaccaatgcatatgttttatctttgatatcttcaatt 47538006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 4033297 - 4033366
Alignment:
Q  178 ctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatat 247  Q
    |||||| ||||| ||||||| |||||||||||||| ||||  || ||||||||  |||||||||| ||||    
T  4033297 ctccgtcccttattagatgatctagttgactctgacacacatatcaatgcatattttttatctttaatat 4033366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 35500957 - 35500925
Alignment:
Q  223 aatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||| ||||||||||||||||||||||||    
T  35500957 aatgcatatgttttatctttgatatcttcaatt 35500925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 36643213 - 36643245
Alignment:
Q  223 aatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||| ||||||||||||||||||||||||    
T  36643213 aatgcatatgttttatctttgatatcttcaatt 36643245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 48531580 - 48531548
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgac 207  Q
    ||||||||| |||||||||||||||||||||||    
T  48531580 tccctccgtcccttaatagatgacctagttgac 48531548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 12755 - 12835
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||  |||||||||||||||||| ||||  | ||||||||| ||||||||||||||||||||||||    
T  12755 tccctccgtccctaaataagtgacctagttgactctgacacacatactaatgcatatgttttatctttgatatcttcaatt 12835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 41475 - 41395
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  41475 tccctccgtccctcaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 41395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 643689 - 643609
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  643689 tccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 643609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 13207195 - 13207131
Alignment:
Q  191 tagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||||||||||||| ||||| |  |||||||| ||||||||||||||||||||||||    
T  13207195 tagatgacctagttgactctgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 13207131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 31854821 - 31854901
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||||| |||||||||||||||||  |  |||||||| ||||||||||||||||||||||||    
T  31854821 tccctccgtccctaaataaatgacccagttgactctgatacacataccaatgcatatgttttatctttgatatcttcaatt 31854901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 33121545 - 33121625
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| |||||||| |||||||||||||||  || ||||| |  |||||||| ||||||||||||||||||||||||    
T  33121545 tccctccgtcccttaataaatgacctagttgacttcgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 33121625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 30237168 - 30237245
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacg-ttttatctttgatatcttc 251  Q
    ||||||||| ||| |||||||||||||||||||||||| ||||| |  |||||||| | |||||||||||||||||||    
T  30237168 tccctccgtccctcaatagatgacctagttgactctgacacacgtaccaatgcatatgtttttatctttgatatcttc 30237245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 18991907 - 18991987
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| ||||  |||||||||||||||||| ||||| |  |||||||| ||||||| ||||||||||||||||    
T  18991907 tccctccgtccctgaataagtgacctagttgactctgacacacgtaccaatgcatatgttttatttttgatatcttcaatt 18991987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 22020283 - 22020359
Alignment:
Q  179 tccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||| | |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  22020283 tccgttcttaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 22020359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 24150748 - 24150824
Alignment:
Q  179 tccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| |||| ||||||||||||||||||| ||||  |  ||||||||  |||||||||||||||||||||||    
T  24150748 tccgttcctaaataaatgacctagttgactctgacacacataccaatgcatatattttatctttgatatcttcaatt 24150824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 11114568 - 11114644
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttc 251  Q
    ||||||||| ||| |||| ||||||||||||| ||||| ||||  |  |||||||| ||||||||||||||||||||    
T  11114568 tccctccgtccctcaataaatgacctagttgattctgacacacataccaatgcatatgttttatctttgatatcttc 11114644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 25435415 - 25435494
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||||||| |||| |||| |||||||||| ||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  25435415 tccctccgttcctcaataaatgatctagttgact-tgacacacataccaatgcatatgttttatctttgatatcttcaatt 25435494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 29986394 - 29986336
Alignment:
Q  197 acctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  29986394 acctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 29986336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 7098112 - 7098051
Alignment:
Q  194 atgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||| |||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  7098112 atgatctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 7098051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 29403650 - 29403727
Alignment:
Q  178 ctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||| | |||||| ||||| ||||||||||||| ||||  |  ||||| || ||||||||||||||||||||||||    
T  29403650 ctccgtcctttaataaatgacttagttgactctgacacacataccaatgcgtatgttttatctttgatatcttcaatt 29403727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 25163215 - 25163247
Alignment:
Q  223 aatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||| ||||||||||||||||||||||||    
T  25163215 aatgcatatgttttatctttgatatcttcaatt 25163247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 16751711 - 16751631
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||| || ||||||||||||||||||| || ||||| |  |||||||| ||||||||||||||||||| ||||    
T  16751711 tccctccgttccatattagatgacctagttgactccgacacacgtaccaatgcatatgttttatctttgatatctttaatt 16751631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 25531781 - 25531861
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  25531781 tccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 25531861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 48219900 - 48219820
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  48219900 tccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 48219820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 3529179 - 3529259
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| |||||||  |||| |||||||||||||| ||||| |  |||||||| |||||||||||||||| |||||||    
T  3529179 tccctccgtcccttaattaatgatctagttgactctgacacacgtaccaatgcatatgttttatctttgatatattcaatt 3529259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 30529308 - 30529228
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||| | |  |||||||| |||||||||| |||||||||||||    
T  30529308 tccctccgtccctcaataaatgacctagttgactctgacacaagtaccaatgcatatgttttatcttagatatcttcaatt 30529228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 32565749 - 32565829
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| | | |||||||||| ||||||||||||| ||||| |  |||||||| ||||| ||||||||||||||||||    
T  32565749 tccctccgtccttcaatagatgacttagttgactctgacacacgtaccaatgcatatgttttctctttgatatcttcaatt 32565829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 32988607 - 32988527
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||  || |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  32988607 tccctccgtctctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 32988527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 39354522 - 39354442
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||| ||| ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  39354522 tccctacgtccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 39354442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 48265069 - 48264989
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  |  |||||||| ||||||||||| ||||||||||||    
T  48265069 tccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatatgttttatctttaatatcttcaatt 48264989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 48376161 - 48376241
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||| |||| | |||||||||||||||| ||| ||| ||||| |  |||||||| ||||||||||||||||||||||||    
T  48376161 tccctctgttcttcaatagatgacctagttaactttgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 48376241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 50539263 - 50539343
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||| |||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  50539263 tccctccgtccctaaataaatgatctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 50539343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 52378992 - 52379072
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||| |||||||||||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  52378992 tccctccgtccctaaataaatgatctagttgactctgacacacataccaatgcatatgttttatctttgatatcttcaatt 52379072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 38458734 - 38458812
Alignment:
Q  177 cctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||| ||| |||| ||||||||||||| ||||| ||||  |  |||||||| ||||||||||||||||||||||||    
T  38458734 cctccgtccctcaataaatgacctagttgattctgacacacataccaatgcatatgttttatctttgatatcttcaatt 38458812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 47222236 - 47222297
Alignment:
Q  194 atgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||||||| || ||||| |  |||||||| ||||||||||||||||||||||||    
T  47222236 atgacctagttgactccgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 47222297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 23569932 - 23569852
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||| ||||||||||  || ||||| |  |||||||| ||||||||||||||||||||||||    
T  23569932 tccctccgtccctcaataaatgatctagttgacttcgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 23569852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 26441640 - 26441720
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||| || || |||| ||||||||||  || ||||| |  |||||||| ||||||||||||||||||||||||    
T  26441640 tccctccgttccatattaaatgatctagttgacttcgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 26441720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 38738220 - 38738156
Alignment:
Q  191 tagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||||||||||||| || ||||| |  |||||||| |||||||||||||||| |||||||    
T  38738220 tagatgacctagttgactccgacacacgtaccaatgcatatgttttatctttgatatgttcaatt 38738156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 45235083 - 45235023
Alignment:
Q  195 tgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||| ||||||||||||| ||||| |  |||||||| ||||||||||||||||||||||||    
T  45235083 tgacttagttgactctgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 45235023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 49805510 - 49805430
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||| |||||||||||||| | ||  |  |||||||| ||||||||||||||||||||||||    
T  49805510 tccctccgtccctaaataaatgatctagttgactctgacaaacataccaatgcatatgttttatctttgatatcttcaatt 49805430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 50481281 - 50481361
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| || || |||||||| ||||||| || || ||||| |  |||||||| ||||||||||||||||||||||||    
T  50481281 tccctccgtcccatattagatgacttagttgattccgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 50481361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 50876367 - 50876447
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||| | |||   |  |||||||| ||||||||||||||||||||||||    
T  50876367 tccctccgtccctaaataaatgacctagttgactctaacacatataccaatgcatatgttttatctttgatatcttcaatt 50876447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 4605002 - 4605081
Alignment:
Q  176 ccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||| |||  |||||||| ||||||||||| || ||||| |  |||||||| ||||||||||||||||||| ||||    
T  4605002 ccctccgtccctcgatagatgatctagttgactccgacacacgtaccaatgcatatgttttatctttgatatctttaatt 4605081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 29161859 - 29161925
Alignment:
Q  189 aatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||| |||| |||||||||||||| ||||| |  ||| |||| ||||||||||||||||||||||||    
T  29161859 aataaatgatctagttgactctgacacacgtaccaattcatatgttttatctttgatatcttcaatt 29161925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 31971632 - 31971567
Alignment:
Q  188 taatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaa 253  Q
    |||||||||| |||||||||||||| ||| | |  |||||||| |||||||||||||||| |||||    
T  31971632 taatagatgatctagttgactctgacacatgtaccaatgcatatgttttatctttgatatattcaa 31971567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 16266165 - 16266245
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| || || || |||| ||||||||||  || ||||| |  |||||||| ||||||||||||||||||||||||    
T  16266165 tccctccgtcccatattaaatgatctagttgacttcgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 16266245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 37281109 - 37281175
Alignment:
Q  189 aatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||||||||||||||||||| | ||  |  |||||||  ||||||||||| ||||||||||||    
T  37281109 aatagatgacctagttgactctgacaaacatacaaatgcatgtgttttatcttttatatcttcaatt 37281175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 16265055 - 16265116
Alignment:
Q  194 atgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    |||| ||||||||||  || ||||| |  |||||||| ||||||||||||||||||||||||    
T  16265055 atgatctagttgacttcgacacacgtaccaatgcatatgttttatctttgatatcttcaatt 16265116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 1849750 - 1849782
Alignment:
Q  223 aatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||| ||||||||||||||||||||||||    
T  1849750 aatgcatatgttttatctttgatatcttcaatt 1849782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 3898781 - 3898749
Alignment:
Q  223 aatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||| ||||||||||||||||||||||||    
T  3898781 aatgcatatgttttatctttgatatcttcaatt 3898749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 14075738 - 14075818
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| || || ||||||| | ||||||||| || ||||  |  |||||||| ||||||| ||||||||||||||||    
T  14075738 tccctccgtcccatattagatgatcgagttgactccgacacacataccaatgcatatgttttatatttgatatcttcaatt 14075818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 42708511 - 42708587
Alignment:
Q  179 tccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||| | |||| ||||  ||||||||||||| ||||  |  |||||||| ||||||| ||||||||||||||||    
T  42708511 tccgttcttaaataaatgatttagttgactctgacacacataccaatgcatatgttttatatttgatatcttcaatt 42708587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 43680120 - 43680152
Alignment:
Q  223 aatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||| ||||||||||||||||||||||||    
T  43680120 aatgcatatgttttatctttgatatcttcaatt 43680152  T

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Target: scaffold0092 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 44366 - 44286
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| ||||||||||||||||||| || |  |  |||||||| ||||||||||||||||||||||||    
T  44366 tccctccgtccctaaataaatgacctagttgactctgacacgcataccaatgcatatgttttatctttgatatcttcaatt 44286  T

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Target: scaffold0027 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 117324 - 117404
Alignment:
Q  175 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttatctttgatatcttcaatt 255  Q
    ||||||||| ||| |||| |||| |||||||||||||| ||||  || |||||||| ||||||||||| ||||||||||||    
T  117324 tccctccgtccctaaataaatgatctagttgactctgacacacatatcaatgcatatgttttatctttaatatcttcaatt 117404  T

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Target: scaffold0111 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 38570 - 38538
Alignment:
Q  223 aatgcatacgttttatctttgatatcttcaatt 255  Q
    |||||||| ||||||||||||||||||||||||    
T  38570 aatgcatatgttttatctttgatatcttcaatt 38538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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