View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_low_44 (Length: 250)
Name: NF11646_low_44
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_low_44 |
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| [»] scaffold0879 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 24422336 - 24422103
Alignment:
| Q |
4 |
tgtatatgtatttagtccaaatttggattaaatgtactacttacttcttttacatatattttattccatttgaacatgagagaattatggcaaatttgga |
103 |
Q |
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| T |
24422336 |
tgtatatgtatttagtccaaatttggattaaatgtactacttacttcttttacatatattttattccatttgaacattagagaattctggcaaatttgga |
24422237 |
T |
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| Q |
104 |
attaatttgactttatcataagtttcacacttgggctctcaatcatgcttgccaattcttctatctaaaagacaaaggatatactaatttgaaatacacc |
203 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24422236 |
attaatttgactttatcatatgtttcacacttgggctctcaatcatgcttgccaattcttctatctaaaagacaaaggatatactaatttgaaatacacc |
24422137 |
T |
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| Q |
204 |
tgctttgacgcgttttcacaaatatttgttgttc |
237 |
Q |
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| T |
24422136 |
ttctttgacgcgttttcacaaatatttgttgttc |
24422103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 24469437 - 24469668
Alignment:
| Q |
1 |
aactgtatatgtatttagtccaaatttggattaaatgtactacttacttcttttacatatattttattccatttgaacatgagagaattatggcaaattt |
100 |
Q |
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| T |
24469437 |
aactgtatatgtatttagtccaaattttgattaaatgcactact----tcttttacgtatattttatttcaattgatcattagaaaattctgtaaaaatg |
24469532 |
T |
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| Q |
101 |
ggaattaatttgactttatcataagtttcacacttgggctctcaatcatgcttgccaattcttctatctaaaagacaaaggatatactaatttgaaatac |
200 |
Q |
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| T |
24469533 |
gaaattaatttgactttatcaaatgtttcacacttgagttctcaatcatgcttgccaattcttctctctaaaagccaaaggatatactaatttgaaatac |
24469632 |
T |
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| Q |
201 |
acctgctttgacgcgttttcacaaatatttgttgtt |
236 |
Q |
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| T |
24469633 |
acctgcacgaacgcgttctcacatatttttgttgtt |
24469668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 24406959 - 24406887
Alignment:
| Q |
91 |
tggcaaatttggaattaatttgactttatcataagtttcacacttg-ggctctcaatcatgcttgccaattct |
162 |
Q |
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| T |
24406959 |
tggcaagttttgaattaatttgactttatcaattgtttcacacttgatgttctcaatcatgcttgccagttct |
24406887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0879 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0879
Description:
Target: scaffold0879; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 3697 - 3928
Alignment:
| Q |
1 |
aactgtatatgtatttagtccaaatttggattaaatgtactacttacttcttttacatatattttattccatttgaacatgagagaattatggcaaattt |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||||||| || |||| ||| ||| |||| || ||| | |
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| T |
3697 |
aactgtatatgtatttagtccaaattttgattaaatgcactact----tcttttacgtatattttatttcaattgatcattagaaaattctgtaaaaatg |
3792 |
T |
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| Q |
101 |
ggaattaatttgactttatcataagtttcacacttgggctctcaatcatgcttgccaattcttctatctaaaagacaaaggatatactaatttgaaatac |
200 |
Q |
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| ||||||||||||||||||| | |||||||||||| | |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
3793 |
gaaattaatttgactttatcaaatgtttcacacttgagttctcaatcatgcttgccaattcttctctctaaaagccaaaggatatactaatttgaaatac |
3892 |
T |
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| Q |
201 |
acctgctttgacgcgttttcacaaatatttgttgtt |
236 |
Q |
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|||||| ||||||| ||||| || ||||||||| |
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| T |
3893 |
acctgcacgaacgcgttctcacatatttttgttgtt |
3928 |
T |
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