View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_low_52 (Length: 240)
Name: NF11646_low_52
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_low_52 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 29276047 - 29276266
Alignment:
| Q |
18 |
aatagcagtgttcaaagtggttcaactgctgaaccatagatagatgaatcaaagtcacatctctccttcattattgattcagtatttctatacatgtttc |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
29276047 |
aatagcagtgttcaaagtggtccaactgctgaaccatagacagatgaaccaaagtcacatctctccttcatcattgattcagtattcctatacatgtttc |
29276146 |
T |
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| Q |
118 |
ttcccaatcacacctaatttctccaataatatatcaatataagatgggacatgtctataccgtataaagtcttgtgatgatccattaattatatttcaag |
217 |
Q |
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| T |
29276147 |
tgcccaatcacacccaatttctccaataatatatcaatataagatgggacatgtctataccgtataaagtcttgtgatgatccat---atatatttcaag |
29276243 |
T |
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| Q |
218 |
ctcttcctttaggaatatgatac |
240 |
Q |
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||||||| ||||||||||||||| |
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| T |
29276244 |
ctcttcccttaggaatatgatac |
29276266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 55858545 - 55858326
Alignment:
| Q |
18 |
aatagcagtgttcaaagtggttcaactgctgaaccatagatagatgaatcaaagtcacatctctccttcattattgattcagtatttctatacatgtttc |
117 |
Q |
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||||||||||||||||||||| |||||||| ||||||||| ||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
55858545 |
aatagcagtgttcaaagtggtccaactgcttaaccatagacagatgaaccaaagtcacatctctccttcatcattgattcagtattcctatacatgtttc |
55858446 |
T |
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| Q |
118 |
ttcccaatcacacctaatttctccaataatatatcaatataagatgggacatgtctataccgtataaagtcttgtgatgatccattaattatatttcaag |
217 |
Q |
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| T |
55858445 |
tgcccaatcacacccaatttcttcaataatatatcaatataagatgggacatgtctataccgtataaagtcttgtgatgatccat---atatatttcaag |
55858349 |
T |
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| Q |
218 |
ctcttcctttaggaatatgatac |
240 |
Q |
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||||| | ||||||||||||||| |
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| T |
55858348 |
ctcttaccttaggaatatgatac |
55858326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 31502931 - 31502728
Alignment:
| Q |
18 |
aatagcagtgttcaaagtggttcaactgctgaaccatagatagatgaatcaaagtcacatctctccttcattattgattcagtatttctatacatgtttc |
117 |
Q |
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||||||||||||||||||||| ||||| ||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
31502931 |
aatagcagtgttcaaagtggtccaactactgaaccctagatagaggaatcaaagtcccatctctccttcatcattgattcagtattcctatacatgtttc |
31502832 |
T |
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| Q |
118 |
ttcccaatcacacctaatttctccaataatatatcaatataagatgggacatgtctataccgtataaagtct--tgtgatgatccattaattatatttca |
215 |
Q |
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| T |
31502831 |
tgcccaatcaaacctaatttctccaataatatatcaatataggatgggacatgtctacaccgtataaagtcttgtgtgatgatccat---atatatttca |
31502735 |
T |
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| Q |
216 |
agctctt |
222 |
Q |
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||||||| |
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| T |
31502734 |
agctctt |
31502728 |
T |
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