View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_low_6 (Length: 594)
Name: NF11646_low_6
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_low_6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 14 - 594
Target Start/End: Original strand, 1067192 - 1067767
Alignment:
| Q |
14 |
catcagaaatttcatgaaaaataaccagacaatggacagtaacaaaactaaactcaatcactatgaaacactaatatagatacgaacatatcggacaaga |
113 |
Q |
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| T |
1067192 |
catctgaaatttcatgaaaaataaccagataatggacagtaacaaaactaaactcaatcactatgaaacactaatatagatacgaacatatcggacaaga |
1067291 |
T |
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| Q |
114 |
cactattgctatcaaattgactcccataataatttgagaaaatgacatagttgcttgtgacctaatgtgtcacactgtcagtgtcgtatcggtttcagac |
213 |
Q |
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| T |
1067292 |
cactattgctatcaaattgactcccataataatttgagaaaatgacatagttgcttgtgacccaatgtgtcagactgtcagtgtcg-----gtttcagac |
1067386 |
T |
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| Q |
214 |
accaacattcaagattggttttaacttgctgagtctcggaatcagttttgtgggcgtcaacaagctaacacatgtcggaagtatatttgtttagaaatgc |
313 |
Q |
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| T |
1067387 |
accaacattcaagattggtttcaacttgctgagtctcggaatcagttttgtgggcgtcaacaagctaacacatgtcggaagtatgtttgtttagaaatgc |
1067486 |
T |
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| Q |
314 |
tggtgctaaccaatcaaaaacaattagaatcaaaagcctccaaaccagaccttacaattgaataaatttccaatcacggtacacctgaaatttcatgaaa |
413 |
Q |
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| T |
1067487 |
tggtgctaaccaatcaaaaacaattagaatcaaaagcctccaaaccagaccttacaattgaataaatttccaatcacggtacacctgaaatttcatgaaa |
1067586 |
T |
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| Q |
414 |
aatagccagacaatggacactaaccaatcacactataaaactgagacaaattctaacatcggacacaacactaattttttgcaagaaaatgttggttgga |
513 |
Q |
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| T |
1067587 |
aatagccagacaatggacagtaaccaatcacactataaaactgagacaaattctaacatcggacacaacactaattttttgcaagaaaatgttggttgga |
1067686 |
T |
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| Q |
514 |
aaacactgctaattctactcacaagaaaaacactcactgctataaacatataaaaagcaaaaccacacgcacgaggtactc |
594 |
Q |
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| T |
1067687 |
aaacactgctaattctactcacaagaaaaacactcactactataaacatataaaaagcaaaaccacacgcacgaggtactc |
1067767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 368 - 437
Target Start/End: Original strand, 1067165 - 1067234
Alignment:
| Q |
368 |
caattgaataaatttccaatcacggtacacctgaaatttcatgaaaaatagccagacaatggacactaac |
437 |
Q |
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| T |
1067165 |
caatggaataaatttccaaccactatacatctgaaatttcatgaaaaataaccagataatggacagtaac |
1067234 |
T |
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