View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_low_7 (Length: 557)
Name: NF11646_low_7
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Complemental strand, 49016669 - 49016157
Alignment:
| Q |
19 |
agctcgtccttggtatgtttttcttctttggtgttaacagcacgcctacaaacccttgcatccttataaatcctgcctggtctacagaagtaacggtttt |
118 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49016669 |
agctcgtccttggtatgtttttcttcttaggtgttaacaccacgcctacaaacccttgcatccttataaatcctgcctggtctacagaagtaactgtttt |
49016570 |
T |
|
| Q |
119 |
tcggtgcacagtgagtatcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49016569 |
tcggtgcacagtgagtatcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtt |
49016470 |
T |
|
| Q |
219 |
tgtccactcactagagaaaagacctcgtgaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttatggattgctcccacaaatcct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49016469 |
tgtccactcactagagaaaagacctcgtgaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttacggattgctcccacaaatcct |
49016370 |
T |
|
| Q |
319 |
aagtttctatttttcccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatg |
418 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49016369 |
aagtttctatttttcccccaatgtggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatg |
49016270 |
T |
|
| Q |
419 |
gatctttactacggtaatatgtgatgtcgaaattcacagcatcctctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataaggattccatt |
518 |
Q |
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| T |
49016269 |
gatctttactacggtaatatgtgatgtcgaaatccacagcat--tctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataaggattccatt |
49016172 |
T |
|
| Q |
519 |
gtatagatctaagcc |
533 |
Q |
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||||||||||||||| |
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| T |
49016171 |
gtatagatctaagcc |
49016157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 250; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 36 - 536
Target Start/End: Original strand, 490102 - 490602
Alignment:
| Q |
36 |
tttttcttctttggtgttaacagcacgcctacaaacccttgcatccttataaatcctgcctggtctacagaagtaacggtttttcggtgcacagtgagta |
135 |
Q |
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||||||||||| || |||||| | ||||||||||||||||||||||||| || ||||||||||| |||||||| ||||| |||| ||| ||| || |
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| T |
490102 |
tttttcttcttaagttttaacatgaagcctacaaacccttgcatccttatagattctgcctggtctgcagaagtagttcttttttggtgaacaatgacta |
490201 |
T |
|
| Q |
136 |
tcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtttgtccactcactagaga |
235 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
490202 |
tcttttgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtctgtccaatcactagaga |
490301 |
T |
|
| Q |
236 |
aaagacctcgt-gaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttatggattgctcccacaaatcctaagtttctatttttcc |
334 |
Q |
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|||| | || | | ||||| | | |||||||||||||||| || ||| || ||||| || | ||||| ||||||||||||| ||||||||||| | |
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| T |
490302 |
aaagtc-tcttcgggtcatatttctttttaaccttcaaaaacctatttgccttattatatttttttattgcccccacaaatcctatatttctattttttc |
490400 |
T |
|
| Q |
335 |
cccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggatctttactacggta |
434 |
Q |
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||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| |
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| T |
490401 |
cccaatggggtaaccctccatatttgaacaatcctatttgttctatctcttcaattatatcttcataaagcctaggagtcaatggatctttactgcggta |
490500 |
T |
|
| Q |
435 |
atatgtgatgtcgaaattcacagcatcctctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataaggattccattgtatagatctaagcca |
534 |
Q |
| |
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|||| ||||||| || | ||||||||| ||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||| | ||||||||| |
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| T |
490501 |
atatatgatgtcaaattccacagcatcttctgtttttcccaagtatgcactagaagttgtaacataacgcatgaggattccattgtacaagtctaagcca |
490600 |
T |
|
| Q |
535 |
ca |
536 |
Q |
| |
|
|| |
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| T |
490601 |
ca |
490602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 5e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 134 - 522
Target Start/End: Complemental strand, 9072257 - 9071869
Alignment:
| Q |
134 |
tatcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtttgtccactcactaga |
233 |
Q |
| |
|
|||||||||| || |||||||| ||||| |||||||| |||| ||| ||||||||||| |||||||| | |||||||||||| | ||||| |||||| |
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| T |
9072257 |
tatcttgtgaacaaatacacaaaccttctaatgcacacccatttttcaatattgtcacaccttcttttattccaagcacttgatccgtccatgtactaga |
9072158 |
T |
|
| Q |
234 |
gaaaagacctcgtgaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttatggattgctcccacaaatcctaagtttctatttttc |
333 |
Q |
| |
|
|||||| ||| |||||||||| | ||||||||||||||||| || | | || ||||| | || |||| ||||| | | |||||||| || |
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| T |
9072157 |
gaaaagtccttgtgaatcatatttctctttaaccttcaaaaatttctcaatatctttgtactttttgaaaactccttcaaatgccacatttctattctta |
9072058 |
T |
|
| Q |
334 |
ccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggatctttactacggt |
433 |
Q |
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|||||||| |||||||||||||| ||||| | ||||||||||| |||||||||| ||||||||| |||||||||||| || ||||||||| ||||| | |
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| T |
9072057 |
ccccaatgaggtaaccctccatacttgaaaattccaatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattggatctttgctacgat |
9071958 |
T |
|
| Q |
434 |
aatatgtgatgtcgaaattcacagcatcctctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataaggattccattgtat |
522 |
Q |
| |
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|||||||||| || || | | ||||||||| |||||| | ||| |||||||||| |||||| || ||||| || |||||||||||| |
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| T |
9071957 |
aatatgtgatatcaaagtctaatgcatcctcttggtttcctaggtaagcactagaagctgtaacataacgcattagaattccattgtat |
9071869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 325 - 442
Target Start/End: Complemental strand, 9059350 - 9059233
Alignment:
| Q |
325 |
ctatttttcccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggatctt |
424 |
Q |
| |
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||||| ||||||||||| || |||||||||||||| || | ||| ||||| || |||||||||| | ||||||| ||||||||||||||| |||||||| |
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| T |
9059350 |
ctattcttcccccaatgaggcaaccctccatatttaaaaatccctatttgctcaatctcttcaaaaacgtcttcataaagcctaggagtcattggatctt |
9059251 |
T |
|
| Q |
425 |
tactacggtaatatgtga |
442 |
Q |
| |
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| ||||||||||| |||| |
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| T |
9059250 |
tgctacggtaatacgtga |
9059233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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