View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11646_low_8 (Length: 554)
Name: NF11646_low_8
Description: NF11646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11646_low_8 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 87 - 554
Target Start/End: Original strand, 36396517 - 36396989
Alignment:
| Q |
87 |
ttcatatcctactcaaacattagctaaatactctaatatctgttgacaaaaaggttcttattagcaacattgaaatatcaaatggagtctaacttacgcg |
186 |
Q |
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| T |
36396517 |
ttcatatcctactcaaacattagctaaatactctaatatctgttgacaaaaaggttcttattagcaacattgaaatatcaaatggagtctaacttacgcg |
36396616 |
T |
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| Q |
187 |
tattgccgttgaaattcattcactgtggacactttctctttttctaaaaaatgattctcgagctggaccctattggtagttactaaaattgaaatttgtc |
286 |
Q |
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| T |
36396617 |
tattgccgttgaaattcattcactgtggacactttctctttttctaaaaaatgattctcgagctggaccctattggtagttactaaaattgaaatttgtc |
36396716 |
T |
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| Q |
287 |
tccggggtgctagggtccaaaattatgcatgattaatgtcattttaaattgagtgggtctactcccaaattttgcaagttgcaatattacaattatgatc |
386 |
Q |
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| T |
36396717 |
tccggggtgctagggtccaaaattatgcatgattaatgtcattttaaattgagtgggtctactcccaaattttgcaagttgcaatattacaattatgatc |
36396816 |
T |
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| Q |
387 |
ttttatgtaattttgggtgtgactgggtcaaatggattcccaacactcaaggaattttgc--tcaattagtcaacatgttatagatcaagtagttggtat |
484 |
Q |
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| T |
36396817 |
ttttatgtaattttgggtgtgactgggtcaaatggattcccaacactcaaggaattttgcagtcaattagtcaacacgttatagatcaagtagttggtat |
36396916 |
T |
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| Q |
485 |
tattatattaaaaaactaaatcag---tatataatttggatttcggagtaacagagaatttgagtcatcgata |
554 |
Q |
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| T |
36396917 |
tattatattaaaaaactaaatcagtactatataatttggatttcggagtaacaaagaatttgagtcaacgata |
36396989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 36396453 - 36396488
Alignment:
| Q |
1 |
taccagacgagagtgaagacgacatagtctatgatg |
36 |
Q |
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| T |
36396453 |
taccagacgagagtgaagacgacatagtctatgatg |
36396488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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