View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11647_high_14 (Length: 241)
Name: NF11647_high_14
Description: NF11647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11647_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 5493678 - 5493897
Alignment:
| Q |
1 |
cattggctgtaactctggactcggccgataccgatcggatcgcttaacggaattcagtttatgatacggtgaacggttaggcttctccgtttgattctga |
100 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5493678 |
cattggctgtaactccggactcggacgataccgatcggatcgcttaacggaattcagtttatgatacggtgaacggttaggcttctccgtttgattctga |
5493777 |
T |
|
| Q |
101 |
tcgttgaccgtcgttgaccttctcgaaggttccacagttccaatgtagagaaaattcgaagctactaccggagcagatgaattcgatgaatcttgaagag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5493778 |
tcgttgaccgtcgttgaccttctcgaaggttccacagttccaatgtagagaaaattcgaagctactaccggagcagatgaattcgatgaatcttgaagag |
5493877 |
T |
|
| Q |
201 |
aattgttcctctgtgtggta |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
5493878 |
aattgttcctctgtgtggta |
5493897 |
T |
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