View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11647_high_5 (Length: 382)
Name: NF11647_high_5
Description: NF11647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11647_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 27 - 381
Target Start/End: Complemental strand, 9963031 - 9962677
Alignment:
| Q |
27 |
tagtgtttctcttcaatcaatccaacttaactatataacaatttcaatttgtcaaaaaagaaccaacatagatgaataatgcattattaattaactaatg |
126 |
Q |
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| T |
9963031 |
tagtgtttctcttcaatcaatccaacttaactatataacaatttcaatttgtcaaaaaagaaccaacatagatgaataatgcattattaattaactaatg |
9962932 |
T |
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| Q |
127 |
acaaagtaatcagttaaatacaattgaaacacatctgcaacaaaaccataaacctctcattaggccagtgaaattgacttcactatcactgtcaaaaaac |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9962931 |
acaaagtaatcagttaaatacaattgaaacacatctgcaacaaaaccataaacctctcattaggccagtgaaattgacttcactatcactgtcaaaaaac |
9962832 |
T |
|
| Q |
227 |
tacactcttcctaatcttattcaataaataattgaatcatgaacnnnnnnnnntctccctaaaaataaaataatagagcctctttgcactaaagccctct |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9962831 |
tacactcttcctaatcttattcaataaataattgaatcatgaacaaaaaaaaatctccctaaaaataaaataatagagcctctttgcactaaagccctct |
9962732 |
T |
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| Q |
327 |
tcttcaacgaatttccagaacttgaaccagtggccgtctacttattatcctatgc |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9962731 |
tcttcaacgaatttccagaacttgaaccagtggccgtctacttattatcccatgc |
9962677 |
T |
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