View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11647_low_1 (Length: 636)
Name: NF11647_low_1
Description: NF11647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11647_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 1 - 618
Target Start/End: Complemental strand, 21918675 - 21918057
Alignment:
| Q |
1 |
gctatggatggcgatctcatctgtatccaccagtaccaatcgactcccctacaatttgtggttggtgcgatgagaaaccaagcacaccaccaccaccaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21918675 |
gctatggatggcgatctcatctgtatccaccagtaccaattgactcccctacaatttgtggttggtgcgatgagaaaccaagcacaccaccaccaccaca |
21918576 |
T |
|
| Q |
101 |
attacatctcgtcaatgtaatttagatgttaaggataaaagatatgactgtgatattttggcgagaggatgaagaagagagagcgaacactaaacatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
21918575 |
attacatctcgtcaatgtaatttagatgttaaggataaaagaaatgactgtgatattttggcgagaggatgaagaagagagagagaacactaaacatctg |
21918476 |
T |
|
| Q |
201 |
actattttaatatgattattttaagtaaaataaaataacaatggttcatgtacatcttttttcctcatacacccaatgtggcaacccatgtgtcattttg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21918475 |
actattttaatatgattattttaagtaaaataaaataacaatggttcatgtacatctttttccctcatacaccctatgtggcaacccatgtgtcattttg |
21918376 |
T |
|
| Q |
301 |
tttaaaagaaaaatctgaccaagccatcctctc--tctcacctcaaaacatctcttttatacatctctttatcaccactcaaataaagagggattgtgta |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21918375 |
tttaaaagaaaaatctgaccaagccatcctctctctctcacctcaaaacatctc-tttatacatctctttatcaccactcaaataaagagggattgtgta |
21918277 |
T |
|
| Q |
399 |
tttgtgattggatataagatattttaaggaataaaagagaaaggtgttaagtgagttggcttgtaaatggatagaaaacatgtaagtgcgatttagttag |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21918276 |
tttgtgattggatataagatattttaaggaataaaagagaaaggtgttaagtgagttggcttgtaaatggatagaaaacatgtaagtgcgatttagttag |
21918177 |
T |
|
| Q |
499 |
aaagtttaccgatccattgagacatggaaattgaaccattttgtcgtttcattgtctcaagttatggttcataaacaaatgtaattgtttgaactacaaa |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21918176 |
aaagtttaccgatccattgagacatggaaattgaaccattttgtcgtttcattgtctcaagttatggttcataaacaaatgtaattgtttgaactacaaa |
21918077 |
T |
|
| Q |
599 |
ttgtaaaagggtgaaacaat |
618 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
21918076 |
ttgtaaaagggtgaaacaat |
21918057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University