View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11647_low_10 (Length: 293)
Name: NF11647_low_10
Description: NF11647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11647_low_10 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 72 - 289
Target Start/End: Complemental strand, 14599481 - 14599264
Alignment:
| Q |
72 |
aattacaactacggttaaagttacacagaacacaacaatgggaacacgaaagagactcatctctccaacaacacaaccttcttctccagatcaaaaacct |
171 |
Q |
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| T |
14599481 |
aattacaactacggttaaagttacacagaacacaacaatgggaacacgaaagagactcatctctccaacaacacaaccttcttctccagatcaaaaacct |
14599382 |
T |
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| Q |
172 |
caacaacaaatcactgacccaccaattgcgcctccaaaatggggttttcttttcaagctctctctcttttccatcccttatttctacctcatcttcttcc |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14599381 |
caacaacaaatcactgacccaccaattgcgcctccaaaatggggttttcttttcaagctttctctcttttccatcccttatttctacctcatcttcttcc |
14599282 |
T |
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| Q |
272 |
atttcacctttgcttctc |
289 |
Q |
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|||||||| ||| ||||| |
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| T |
14599281 |
atttcaccattgattctc |
14599264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 91 - 289
Target Start/End: Original strand, 37769 - 37967
Alignment:
| Q |
91 |
gttacacagaacacaacaatgggaacacgaaagagactcatctctccaacaacacaaccttcttctccagatcaaaaacctcaacaacaaatcactgacc |
190 |
Q |
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| T |
37769 |
gttacacagaacacaacaatgggaacacgaaagagactcatctctccaacaacacaaccttcttctccagatcaaaaacctcaacaacaaatcactgacc |
37868 |
T |
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| Q |
191 |
caccaattgcgcctccaaaatggggttttcttttcaagctctctctcttttccatcccttatttctacctcatcttcttccatttcacctttgcttctc |
289 |
Q |
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| T |
37869 |
caccaattgcgcctccaaaatggggttttcttttcaagctctctctcttttccatcccttatttctacctcatcttcttccatttcaccattgattctc |
37967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 172 - 279
Target Start/End: Original strand, 18331074 - 18331181
Alignment:
| Q |
172 |
caacaacaaatcactgacccaccaattgcgcctccaaaatggggttttcttttcaagctctctctcttttccatcccttatttctacctcatcttcttcc |
271 |
Q |
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|||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
18331074 |
caacaacaaaccaccgacccaccaattgcgcctcccaaatggggttttcttttcaagctctctctcttttccatcccttacttctacctcatctttttcc |
18331173 |
T |
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| Q |
272 |
atttcacc |
279 |
Q |
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| T |
18331174 |
atttcacc |
18331181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 18330992 - 18331025
Alignment:
| Q |
108 |
aatgggaacacgaaagagactcatctctccaaca |
141 |
Q |
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| T |
18330992 |
aatgggaacacgaaagagactcatctctccaaca |
18331025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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